Variant report

Variant	rs73221144
Chromosome Location	chr3:132989239-132989240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:132983643..132985958-chr3:132988828..132991292,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11706381	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11707893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11709476	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11709601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11714849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11717365	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11718154	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11720904	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207710	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207711	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207716	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207719	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73207744	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73207746	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73207749	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73209818	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73209820	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73209824	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73209829	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73209837	0.82[EUR][1000 genomes]
rs73209843	0.83[AMR][1000 genomes]
rs73209853	0.83[AMR][1000 genomes]
rs73217520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73217532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73217540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73217543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73217553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73217560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73221166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73221167	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73221180	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221182	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221187	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73222854	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132984000-132994800	Weak transcription	HSMMtube	muscle
2	chr3:132985400-133002800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:132986400-132989800	Weak transcription	Lung	lung
4	chr3:132986800-132990000	Enhancers	Fetal Muscle Leg	muscle
5	chr3:132987600-132989800	Enhancers	Fetal Lung	lung
6	chr3:132988000-132995200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:132988400-132989400	Weak transcription	Fetal Brain Male	brain
8	chr3:132988400-132994200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:132988400-132998400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:132988800-132989600	Enhancers	Psoas Muscle	Psoas
11	chr3:132988800-132990200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:132988800-132990400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:132988800-132990400	Weak transcription	Fetal Stomach	stomach
14	chr3:132988800-132995600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:132988800-133002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:132989000-132989400	Weak transcription	Right Atrium	heart
17	chr3:132989200-132989800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links