Variant report

Variant	rs73209829
Chromosome Location	chr3:133088095-133088096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11706381	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11707893	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11709476	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11709601	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11714849	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11717365	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11718154	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11720904	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1197295	0.83[EUR][1000 genomes]
rs34111099	0.93[EUR][1000 genomes]
rs73207710	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73207711	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73207716	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73207719	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73207744	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73207746	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73207749	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209818	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209820	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209824	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209837	0.98[EUR][1000 genomes]
rs73209843	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73217520	0.83[AMR][1000 genomes]
rs73217532	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73217540	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73217543	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73217553	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73217560	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73221144	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73221166	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73221167	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73221180	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221182	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221187	0.89[EUR][1000 genomes]
rs73222854	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133080800-133098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:133081800-133090000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:133083200-133099200	Weak transcription	Lung	lung
4	chr3:133085600-133088200	Enhancers	Fetal Brain Male	brain
5	chr3:133085800-133091600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:133086200-133088400	Enhancers	Brain Substantia Nigra	brain
7	chr3:133086200-133088600	Enhancers	Fetal Lung	lung
8	chr3:133086200-133090200	Enhancers	Fetal Brain Female	brain
9	chr3:133086200-133090800	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:133086400-133090400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:133086600-133088200	Enhancers	Brain Anterior Caudate	brain
12	chr3:133086600-133088400	Enhancers	Brain Angular Gyrus	brain
13	chr3:133086800-133088200	Enhancers	Fetal Muscle Leg	muscle
14	chr3:133086800-133089800	Enhancers	Brain Germinal Matrix	brain
15	chr3:133087600-133088600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:133088000-133089200	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:133088000-133091000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:133088000-133093800	Weak transcription	HSMMtube	muscle

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