Variant report

Variant	rs7322482
Chromosome Location	chr13:92924931-92924932
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1016907	0.81[EUR][1000 genomes]
rs12146956	0.81[CEU][hapmap]
rs12864515	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12866518	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12867096	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12868053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12868873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12870067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12873491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12873537	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12873744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12874073	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12876115	0.81[CEU][hapmap]
rs1556343	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17429429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1926621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1926622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1952223	0.81[LWK][hapmap]
rs2148520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs34536711	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34998773	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35927186	0.81[EUR][1000 genomes]
rs4439626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71419722	0.97[ASN][1000 genomes]
rs71432003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71432006	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71432007	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321645	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7321767	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7326904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7327268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9516026	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs9516029	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9516030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9516031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9516032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9516033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516035	0.97[ASN][1000 genomes]
rs9516036	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516037	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516038	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516044	1.00[CEU][hapmap]
rs9516047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516048	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516050	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516057	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516065	0.80[CEU][hapmap]
rs9523565	0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs9523575	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs9523578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523579	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9523586	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9523598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9523600	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs9523603	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523605	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523606	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523608	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523611	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523612	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv916531	chr13:92922404-92941030	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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