Variant report

Variant	rs9523565
Chromosome Location	chr13:92919479-92919480
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1016907	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12865700	0.85[CEU][hapmap]
rs12866518	0.81[EUR][1000 genomes]
rs12867096	1.00[JPT][hapmap]
rs12868053	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12868873	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12870067	0.81[EUR][1000 genomes]
rs12873491	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12873537	0.81[EUR][1000 genomes]
rs12873744	0.81[EUR][1000 genomes]
rs1556343	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17429429	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1926621	0.84[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1926622	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1952223	0.87[YRI][hapmap]
rs2148520	0.85[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs35927186	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4439626	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs71432004	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7321645	0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7321767	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7322482	0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7326904	0.85[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7327268	0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs9516026	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9516029	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9516030	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9516031	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9516032	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9516033	0.81[EUR][1000 genomes]
rs9516044	0.91[CEU][hapmap]
rs9516047	0.81[EUR][1000 genomes]
rs9516048	0.81[EUR][1000 genomes]
rs9516049	0.81[EUR][1000 genomes]
rs9516056	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523575	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523578	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523579	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9523580	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523595	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523598	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523600	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9523602	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523607	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs9523609	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523610	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523643	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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