Variant report

Variant	rs9523579
Chromosome Location	chr13:92927789-92927790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1016907	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12146956	1.00[CHB][hapmap]
rs12859500	1.00[CHB][hapmap]
rs12864515	0.89[AMR][1000 genomes]
rs12865328	1.00[CHB][hapmap]
rs12865700	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12866518	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12867096	1.00[JPT][hapmap]
rs12868053	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12868873	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12870067	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12871422	1.00[CHB][hapmap]
rs12873491	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12873537	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12873633	1.00[CHB][hapmap]
rs12873744	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12874073	0.89[AMR][1000 genomes]
rs12877510	1.00[CHB][hapmap]
rs1556343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17429429	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs17430948	1.00[CHB][hapmap]
rs1926621	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs1926622	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1926651	1.00[CHB][hapmap]
rs2148520	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs2225059	1.00[CHB][hapmap]
rs34536711	0.89[AMR][1000 genomes]
rs34998773	0.89[AMR][1000 genomes]
rs35927186	1.00[EUR][1000 genomes]
rs4439626	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs71432004	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71432006	0.89[AMR][1000 genomes]
rs71432007	0.89[AMR][1000 genomes]
rs7321645	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7321767	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7322482	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7326904	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7327268	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7985683	1.00[CHB][hapmap]
rs7987423	1.00[CHB][hapmap]
rs7988570	1.00[CHB][hapmap]
rs9516026	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9516029	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9516030	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9516031	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9516032	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9516033	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516036	0.84[AMR][1000 genomes]
rs9516037	0.89[AMR][1000 genomes]
rs9516038	0.84[AMR][1000 genomes]
rs9516044	0.91[CEU][hapmap]
rs9516047	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516048	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516049	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516050	0.89[AMR][1000 genomes]
rs9516056	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516057	0.89[AMR][1000 genomes]
rs9516058	1.00[CHB][hapmap]
rs9516059	1.00[CHB][hapmap]
rs9516065	1.00[CHB][hapmap]
rs9516066	1.00[CHB][hapmap]
rs9523565	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9523575	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523578	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523580	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523586	0.89[AMR][1000 genomes]
rs9523595	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523598	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs9523600	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9523602	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523603	0.89[AMR][1000 genomes]
rs9523605	0.89[AMR][1000 genomes]
rs9523606	0.89[AMR][1000 genomes]
rs9523607	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs9523608	0.89[AMR][1000 genomes]
rs9523609	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523610	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523611	0.89[AMR][1000 genomes]
rs9523612	0.89[AMR][1000 genomes]
rs9523620	1.00[CHB][hapmap]
rs9523621	1.00[CHB][hapmap]
rs9523624	1.00[CHB][hapmap]
rs9523625	1.00[CHB][hapmap]
rs9523626	1.00[CHB][hapmap]
rs9523629	1.00[CHB][hapmap]
rs9523643	1.00[CHB][hapmap]
rs9523644	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv518324	chr13:92917856-92955354	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv916531	chr13:92922404-92941030	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links