Variant report

Variant	rs7325826
Chromosome Location	chr13:52818257-52818258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs2478956	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs2768118	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4941729	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6650386	0.94[YRI][hapmap]
rs719349	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9526840	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9526852	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9526910	1.00[CEU][hapmap]
rs9526915	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9526916	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535875	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9535886	1.00[JPT][hapmap]
rs9535890	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs9535892	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535893	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535894	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap]
rs9535900	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs9535901	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535902	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535910	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535960	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535968	1.00[CEU][hapmap]
rs9536018	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536019	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536028	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536029	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536040	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536041	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536042	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536049	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536050	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536051	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536053	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536057	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536058	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536061	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536067	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536072	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9536073	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv983588	chr13:52772461-52833538	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
8	nsv900083	chr13:52783120-52885838	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv2453475	chr13:52803686-52895029	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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