Variant report

Variant	rs9526916
Chromosome Location	chr13:53003826-53003827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:53003587-53003839	K562	blood:	n/a	n/a

Variant related genes	Relation type
VPS36	TF binding region

Extended variants
information (count: 203 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:196)

rs_ID	r²[population]
rs1053245	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148250	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148251	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184815	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17087405	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478956	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs2760780	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2760801	0.82[CEU][hapmap]
rs2768118	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs28589286	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756262	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34355831	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35975091	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs35975899	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809374	1.00[JPT][hapmap]
rs41292810	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292818	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884629	1.00[CEU][hapmap]
rs55850688	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56173235	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56249382	1.00[ASN][1000 genomes]
rs57412438	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57831032	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57904860	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58655347	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60322427	1.00[ASN][1000 genomes]
rs60406129	1.00[ASN][1000 genomes]
rs61011708	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61171418	1.00[ASN][1000 genomes]
rs61677410	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617660	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs61957307	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61957966	0.87[ASN][1000 genomes]
rs61957967	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957976	1.00[ASN][1000 genomes]
rs61957977	1.00[ASN][1000 genomes]
rs61957978	1.00[ASN][1000 genomes]
rs61957980	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957981	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957982	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957983	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957984	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957986	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957987	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957988	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957989	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957993	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957995	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957996	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957997	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958009	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958010	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958011	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958012	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958013	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958014	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958016	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958017	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958018	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958019	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958020	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958023	1.00[ASN][1000 genomes]
rs61958024	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958026	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958048	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958049	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958051	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958052	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958053	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958055	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958057	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958058	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958059	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959660	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959661	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959663	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959666	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959667	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959668	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959669	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959670	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959672	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959673	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959674	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959675	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959676	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959677	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959679	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959680	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61959698	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959702	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959706	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61959707	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61959784	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630892	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs676306	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs693991	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7325826	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7331858	0.87[ASN][1000 genomes]
rs7983047	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526881	0.86[ASN][1000 genomes]
rs9526882	1.00[ASN][1000 genomes]
rs9526888	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526890	1.00[ASN][1000 genomes]
rs9526892	1.00[ASN][1000 genomes]
rs9526895	1.00[ASN][1000 genomes]
rs9526896	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526897	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526898	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526901	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9526902	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526903	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526905	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9526906	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526908	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526909	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526910	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526915	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526924	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526926	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9526957	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9526958	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535960	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535968	1.00[CEU][hapmap]
rs9535975	1.00[ASN][1000 genomes]
rs9535991	0.86[ASN][1000 genomes]
rs9536003	0.87[ASN][1000 genomes]
rs9536004	1.00[ASN][1000 genomes]
rs9536005	1.00[ASN][1000 genomes]
rs9536007	0.86[ASN][1000 genomes]
rs9536008	1.00[ASN][1000 genomes]
rs9536009	1.00[ASN][1000 genomes]
rs9536018	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536019	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536020	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536022	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536025	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536026	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536027	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536028	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536029	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536031	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536033	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536034	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536036	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536037	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536038	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536039	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9536040	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536041	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536042	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536043	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536044	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536045	0.81[EUR][1000 genomes]
rs9536047	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536049	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536050	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536051	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536053	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536054	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536056	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536057	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536058	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536059	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536060	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536061	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536062	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536063	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536064	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536065	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536067	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536068	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536070	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536072	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536073	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536074	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536075	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536076	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536077	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536078	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536080	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536081	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536083	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536084	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536085	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536087	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536088	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536090	0.90[AMR][1000 genomes]
rs9536097	0.90[AMR][1000 genomes]
rs9536098	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536099	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes]
rs9536184	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9596645	1.00[ASN][1000 genomes]
rs9741870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3434605	chr13:52999509-53034851	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52980200-53021600	Weak transcription	Small Intestine	intestine
2	chr13:52981000-53022800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:52982800-53012600	Weak transcription	Fetal Brain Male	brain
4	chr13:52983800-53016600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr13:52984400-53023400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:52984800-53013400	Strong transcription	Dnd41	blood
7	chr13:52985000-53013400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:52985000-53017400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr13:52985000-53019400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr13:52985600-53004000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:52985600-53010600	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr13:52986000-53017000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr13:52986600-53013400	Strong transcription	Liver	Liver
14	chr13:52987000-53004200	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr13:52987200-53023600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr13:52988800-53010000	Weak transcription	Esophagus	oesophagus
17	chr13:52989000-53006000	Weak transcription	NHLF	lung
18	chr13:52989000-53015000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:52989000-53016200	Strong transcription	Adipose Nuclei	Adipose
20	chr13:52989000-53021600	Weak transcription	Fetal Heart	heart
21	chr13:52989000-53022800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:52989400-53015000	Weak transcription	Lung	lung
23	chr13:52990800-53015000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr13:52991000-53007200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr13:52991200-53017000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:52991600-53008800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr13:52993200-53004400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr13:52993200-53010000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr13:52993400-53008000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:52993400-53008400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr13:52993400-53008400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr13:52995000-53017800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr13:52995200-53023800	Weak transcription	Aorta	Aorta
34	chr13:52995600-53008800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr13:52995800-53019800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:52995800-53023800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr13:52996000-53004200	Strong transcription	HSMM	muscle
38	chr13:52996200-53011200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr13:52997000-53005000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr13:52999000-53022400	Weak transcription	Right Ventricle	heart
41	chr13:52999600-53004200	Strong transcription	NHDF-Ad	bronchial
42	chr13:53000000-53004600	Strong transcription	Primary B cells from cord blood	blood
43	chr13:53000400-53007800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr13:53000600-53022200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr13:53001200-53006600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr13:53001800-53022200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr13:53002000-53016400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr13:53002000-53016800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr13:53002200-53004600	Strong transcription	Fetal Thymus	thymus
50	chr13:53002200-53017000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links