Variant report

Variant	rs4884629
Chromosome Location	chr13:53073430-53073431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CKAP2-1	chr13:53073178-53073440	ENSG00000244471.1

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11148262	1.00[CEU][hapmap]
rs1436728	1.00[CEU][hapmap]
rs1925135	1.00[CEU][hapmap]
rs2118093	1.00[CEU][hapmap]
rs2760780	1.00[CEU][hapmap]
rs2760801	0.82[CEU][hapmap]
rs342774	1.00[CEU][hapmap]
rs342777	1.00[CEU][hapmap]
rs35975091	1.00[CEU][hapmap]
rs4539485	1.00[CEU][hapmap]
rs4542538	1.00[CEU][hapmap]
rs4884223	1.00[CEU][hapmap]
rs4885804	1.00[CEU][hapmap]
rs4885887	1.00[CEU][hapmap]
rs4885910	1.00[CEU][hapmap]
rs617660	1.00[CEU][hapmap]
rs630892	1.00[CEU][hapmap]
rs646498	1.00[CEU][hapmap]
rs6561673	1.00[CEU][hapmap]
rs6561674	1.00[CEU][hapmap]
rs6561677	1.00[CEU][hapmap]
rs6561684	1.00[CEU][hapmap]
rs676306	1.00[CEU][hapmap]
rs693991	1.00[CEU][hapmap]
rs7319451	0.82[CEU][hapmap]
rs7330193	1.00[CEU][hapmap]
rs7330361	1.00[CEU][hapmap]
rs7335270	1.00[CEU][hapmap]
rs7987405	1.00[CEU][hapmap]
rs7995188	1.00[CEU][hapmap]
rs7996692	1.00[CEU][hapmap]
rs7999466	1.00[CEU][hapmap]
rs8000715	1.00[CEU][hapmap]
rs9316581	1.00[CEU][hapmap]
rs9316583	1.00[CEU][hapmap]
rs9526910	1.00[CEU][hapmap]
rs9526915	1.00[CEU][hapmap]
rs9526916	1.00[CEU][hapmap]
rs9526924	1.00[CEU][hapmap]
rs9526957	1.00[CEU][hapmap]
rs9526958	1.00[CEU][hapmap]
rs9526966	0.82[CEU][hapmap]
rs9526970	1.00[CEU][hapmap]
rs9526978	1.00[CEU][hapmap]
rs9536018	1.00[CEU][hapmap]
rs9536019	1.00[CEU][hapmap]
rs9536028	1.00[CEU][hapmap]
rs9536029	1.00[CEU][hapmap]
rs9536040	1.00[CEU][hapmap]
rs9536041	1.00[CEU][hapmap]
rs9536042	1.00[CEU][hapmap]
rs9536049	1.00[CEU][hapmap]
rs9536050	1.00[CEU][hapmap]
rs9536051	1.00[CEU][hapmap]
rs9536053	1.00[CEU][hapmap]
rs9536057	1.00[CEU][hapmap]
rs9536058	1.00[CEU][hapmap]
rs9536061	1.00[CEU][hapmap]
rs9536067	1.00[CEU][hapmap]
rs9536072	1.00[CEU][hapmap]
rs9536073	1.00[CEU][hapmap]
rs9536075	1.00[CEU][hapmap]
rs9536076	1.00[CEU][hapmap]
rs9536077	1.00[CEU][hapmap]
rs9536078	1.00[CEU][hapmap]
rs9536080	1.00[CEU][hapmap]
rs9536083	1.00[CEU][hapmap]
rs9536084	1.00[CEU][hapmap]
rs9536098	1.00[CEU][hapmap]
rs9536099	1.00[CEU][hapmap]
rs9536184	1.00[CEU][hapmap]
rs9536222	1.00[CEU][hapmap]
rs9536228	1.00[CEU][hapmap]
rs9536232	1.00[CEU][hapmap]
rs9536235	1.00[CEU][hapmap]
rs9536238	1.00[CEU][hapmap]
rs9536241	1.00[CEU][hapmap]
rs971513	1.00[CEU][hapmap]
rs973198	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv900086	chr13:53030565-53208030	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	esv2421964	chr13:53051526-53160234	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1038132	chr13:53057359-53190994	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1044949	chr13:53071140-53289426	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
12	esv2761790	chr13:53071152-53145658	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2760295	chr13:53071152-53178504	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv983590	chr13:53073042-53076333	Enhancers	lncRNA	n/a	inside rSNPs	n/a
15	nsv977245	chr13:53073042-53103283	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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