Variant report

Variant	rs9536018
Chromosome Location	chr13:52913135-52913136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr13:52913058-52913332	NB4	blood:	n/a	chr13:52913189-52913199

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52912142..52914038-chr13:53027111..53030016,2	K562	blood:
2	chr13:52911600..52913908-chr13:53027001..53029186,3	MCF-7	breast:

Variant related genes	Relation type
TPTE2P2	TF binding region
ENSG00000136108	Chromatin interaction

Extended variants
information (count: 205 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:199)

rs_ID	r²[population]
rs1053245	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148250	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184815	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17087405	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478956	1.00[JPT][hapmap]
rs2768118	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs28589286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34355831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35975091	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs35975899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809374	1.00[JPT][hapmap]
rs41292810	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884629	1.00[CEU][hapmap]
rs4941729	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs55850688	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56173235	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56249382	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57412438	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57831032	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57904860	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58655347	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60322427	1.00[ASN][1000 genomes]
rs60406129	1.00[ASN][1000 genomes]
rs61011708	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61171418	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61677410	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957307	1.00[ASN][1000 genomes]
rs61957966	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61957967	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957976	1.00[ASN][1000 genomes]
rs61957977	1.00[ASN][1000 genomes]
rs61957978	1.00[ASN][1000 genomes]
rs61957980	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957981	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957984	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957995	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957996	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957997	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958009	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958011	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958014	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958017	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958019	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958020	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958023	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958024	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958025	0.90[EUR][1000 genomes]
rs61958026	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958052	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958053	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958059	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959660	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959664	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959668	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959673	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959674	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959677	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959679	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959706	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959707	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959784	1.00[ASN][1000 genomes]
rs7325826	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7331858	0.87[ASN][1000 genomes]
rs7983047	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526840	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9526852	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9526881	0.86[ASN][1000 genomes]
rs9526882	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526890	1.00[ASN][1000 genomes]
rs9526892	1.00[ASN][1000 genomes]
rs9526895	1.00[ASN][1000 genomes]
rs9526896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526901	1.00[ASN][1000 genomes]
rs9526902	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526905	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9526906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526908	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526909	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526910	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526915	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526916	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526924	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526926	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535886	1.00[JPT][hapmap]
rs9535890	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535892	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535893	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535894	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535900	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535901	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535902	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535910	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9535960	1.00[JPT][hapmap]
rs9535968	1.00[CEU][hapmap]
rs9535975	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535991	0.86[ASN][1000 genomes]
rs9536003	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9536004	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536005	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536007	0.86[ASN][1000 genomes]
rs9536008	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536009	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536019	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536023	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536028	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536029	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536039	1.00[EUR][1000 genomes]
rs9536040	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536041	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536042	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536044	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536045	0.90[EUR][1000 genomes]
rs9536047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536049	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536050	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536051	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536053	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536054	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536057	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536058	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536059	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536060	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536061	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536064	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536067	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536070	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536072	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536073	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536075	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536076	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536077	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536078	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536080	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536083	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536084	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536085	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536087	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536088	1.00[ASN][1000 genomes]
rs9536090	0.86[EUR][1000 genomes]
rs9536097	0.86[EUR][1000 genomes]
rs9536098	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536099	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs9596645	1.00[ASN][1000 genomes]
rs9741870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536018	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52911800-52913400	Enhancers	HepG2	liver
2	chr13:52912200-52913400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:52912800-52913600	Enhancers	Fetal Heart	heart
4	chr13:52913000-52913400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:52913000-52918000	Weak transcription	HSMM	muscle
6	chr13:52913000-52918200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links