Variant report

Variant	rs61959677
Chromosome Location	chr13:53025287-53025288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:53025220-53025370	AG04450	lung:	n/a	n/a
2	POLR2A	chr13:53023503-53025344	MCF10A-Er-Src	breast:	n/a	n/a
3	CTCF	chr13:53025200-53025350	GM12867	blood:	n/a	n/a
4	RAD21	chr13:53023794-53025339	SK-N-SH	brain:	n/a	chr13:53024907-53024926 chr13:53024786-53024805 chr13:53024911-53024921
5	SETDB1	chr13:53024465-53025293	U2OS	brain:	n/a	n/a
6	HCFC1	chr13:53023974-53025305	Hela-S3	cervix:	n/a	n/a
7	RAD21	chr13:53024431-53025289	HCT-116	colon:	n/a	chr13:53024907-53024926 chr13:53024786-53024805 chr13:53024911-53024921
8	POLR2A	chr13:53023558-53025435	MCF10A-Er-Src	breast:	n/a	n/a
9	CTCF	chr13:53023759-53025474	SK-N-SH	brain:	n/a	chr13:53024912-53024922 chr13:53024909-53024927 chr13:53024911-53024924 chr13:53024904-53024925 chr13:53024911-53024924 chr13:53024788-53024806 chr13:53024582-53024591 chr13:53024915-53024924 chr13:53024910-53024926 chr13:53024789-53024805 chr13:53024783-53024804
10	CTCF	chr13:53024068-53025352	A549	lung:	n/a	chr13:53024912-53024922 chr13:53024909-53024927 chr13:53024911-53024924 chr13:53024904-53024925 chr13:53024911-53024924 chr13:53024788-53024806 chr13:53024582-53024591 chr13:53024915-53024924 chr13:53024910-53024926 chr13:53024789-53024805 chr13:53024783-53024804
11	REST	chr13:53023935-53025324	H1-neurons	neurons:	n/a	n/a
12	CTCF	chr13:53025220-53025370	NHDF-neo	bronchial:	n/a	n/a
13	SMC3	chr13:53023581-53025312	SK-N-SH	brain:	n/a	chr13:53024911-53024925 chr13:53024385-53024395 chr13:53024790-53024804 chr13:53024911-53024921
14	POLR2A	chr13:53023975-53025321	IMR90	lung:	n/a	n/a
15	CHD1	chr13:53023939-53025462	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:53023259..53027625-chr13:53027753..53030727,5	MCF-7	breast:
2	chr13:53023588..53025754-chr13:53225469..53228375,2	K562	blood:
3	chr13:53023126..53025517-chr17:56734157..56736833,2	MCF-7	breast:

Variant related genes	Relation type
CKAP2	TF binding region
VPS36	TF binding region
ENSG00000165416	Chromatin interaction
ENSG00000136108	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 186 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs1053245	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148250	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148251	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184815	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17087405	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589286	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756262	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34355831	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35975899	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292810	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55850688	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56173235	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56249382	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57412438	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57831032	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57904860	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58655347	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60322427	1.00[ASN][1000 genomes]
rs60406129	1.00[ASN][1000 genomes]
rs61011708	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61171418	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61677410	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957307	1.00[ASN][1000 genomes]
rs61957966	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61957967	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957976	1.00[ASN][1000 genomes]
rs61957977	1.00[ASN][1000 genomes]
rs61957978	1.00[ASN][1000 genomes]
rs61957980	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957981	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957982	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957983	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957984	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957986	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957987	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957988	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957989	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957993	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957995	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957996	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957997	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958009	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958010	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958011	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958012	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958013	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958014	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958016	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958017	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958018	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958019	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958020	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958023	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958024	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958025	0.84[EUR][1000 genomes]
rs61958026	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958048	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958052	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958053	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958059	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959660	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959661	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959664	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959668	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959670	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959673	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959674	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959679	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959698	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959702	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959706	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959707	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959784	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7331858	0.87[ASN][1000 genomes]
rs7983047	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526881	0.86[ASN][1000 genomes]
rs9526882	1.00[ASN][1000 genomes]
rs9526888	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526890	1.00[ASN][1000 genomes]
rs9526892	1.00[ASN][1000 genomes]
rs9526895	1.00[ASN][1000 genomes]
rs9526896	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526897	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526898	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526901	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9526902	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526903	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526905	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9526906	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526908	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526909	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526910	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526915	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526916	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526924	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526926	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535975	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535991	0.86[ASN][1000 genomes]
rs9536003	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9536004	1.00[ASN][1000 genomes]
rs9536005	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536007	0.86[ASN][1000 genomes]
rs9536008	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536009	1.00[ASN][1000 genomes]
rs9536018	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536019	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536020	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536022	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536023	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536025	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536026	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536027	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536028	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536029	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536031	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536033	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536034	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536036	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536037	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536038	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536039	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9536040	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536041	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536042	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536043	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536044	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536045	0.84[EUR][1000 genomes]
rs9536047	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536049	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536050	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536051	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536053	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536054	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536056	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536057	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536058	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536059	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536060	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536061	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536062	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536063	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536064	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536065	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536067	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536068	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536070	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536073	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536075	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536078	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536080	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536081	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536083	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536084	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536085	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536087	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536088	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536090	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536097	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536099	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9596645	1.00[ASN][1000 genomes]
rs9741870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3434605	chr13:52999509-53034851	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
8	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61959677	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53023200-53025400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:53023800-53025400	Active TSS	NH-A	brain
3	chr13:53024800-53025400	Enhancers	Primary B cells from peripheral blood	blood
4	chr13:53024800-53025400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr13:53024800-53025400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:53024800-53025400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr13:53024800-53025400	Enhancers	Fetal Lung	lung
8	chr13:53024800-53026400	Enhancers	Fetal Muscle Trunk	muscle
9	chr13:53024800-53028600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:53024800-53028600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:53024800-53028600	Weak transcription	Esophagus	oesophagus
12	chr13:53024800-53028600	Weak transcription	Gastric	stomach
13	chr13:53024800-53028600	Weak transcription	Left Ventricle	heart
14	chr13:53024800-53028600	Weak transcription	Right Atrium	heart
15	chr13:53024800-53028600	Weak transcription	Right Ventricle	heart
16	chr13:53024800-53028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr13:53025000-53025400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr13:53025000-53025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:53025000-53025400	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr13:53025000-53025400	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr13:53025000-53025400	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr13:53025000-53025400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr13:53025000-53025400	Flanking Active TSS	Fetal Brain Female	brain
24	chr13:53025000-53025400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr13:53025000-53025400	Flanking Active TSS	Thymus	Thymus
26	chr13:53025000-53025600	Enhancers	Fetal Brain Male	brain
27	chr13:53025000-53028200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr13:53025000-53028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr13:53025000-53028600	Weak transcription	Pancreas	Pancrea
30	chr13:53025000-53028600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr13:53025200-53025400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr13:53025200-53025400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr13:53025200-53025400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr13:53025200-53025400	Enhancers	Primary B cells from cord blood	blood
35	chr13:53025200-53025400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr13:53025200-53025400	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr13:53025200-53025400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr13:53025200-53025400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr13:53025200-53025400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr13:53025200-53025400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr13:53025200-53025400	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr13:53025200-53025400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr13:53025200-53025400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr13:53025200-53025400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr13:53025200-53025400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr13:53025200-53025400	Enhancers	Adipose Nuclei	Adipose
47	chr13:53025200-53025400	Enhancers	Brain Hippocampus Middle	brain
48	chr13:53025200-53025400	Enhancers	Colonic Mucosa	Colon
49	chr13:53025200-53025400	Enhancers	Colon Smooth Muscle	Colon
50	chr13:53025200-53025400	Enhancers	Fetal Intestine Large	intestine

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