Variant report

Variant	rs9526882
Chromosome Location	chr13:52892827-52892828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52888663..52890246-chr13:52890532..52893511,2	MCF-7	breast:

Extended variants
information (count: 192 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs1053245	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148250	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148251	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184815	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17087405	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589286	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756262	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34355831	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35975899	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292810	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292818	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55850688	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56173235	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56249382	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57412438	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57831032	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57904860	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58452626	0.82[AFR][1000 genomes]
rs58655347	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60322427	1.00[ASN][1000 genomes]
rs60406129	1.00[ASN][1000 genomes]
rs60928383	0.82[AFR][1000 genomes]
rs61011708	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61171418	1.00[ASN][1000 genomes]
rs61193099	0.82[AFR][1000 genomes]
rs61677410	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957307	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957966	0.87[ASN][1000 genomes]
rs61957967	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957976	1.00[ASN][1000 genomes]
rs61957977	1.00[ASN][1000 genomes]
rs61957978	1.00[ASN][1000 genomes]
rs61957980	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957981	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957982	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957983	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957984	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957986	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957987	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957988	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957989	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957993	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957995	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957996	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957997	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958009	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958010	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958011	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958012	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958013	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958014	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958016	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958017	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958018	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958019	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958020	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958023	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958024	1.00[ASN][1000 genomes]
rs61958025	0.84[EUR][1000 genomes]
rs61958026	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958048	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958049	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958051	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958052	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958053	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958055	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958057	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958058	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958059	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959660	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959661	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959663	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959664	1.00[ASN][1000 genomes]
rs61959666	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959667	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959668	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959669	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959670	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959672	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959673	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959674	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959675	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959676	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959677	1.00[ASN][1000 genomes]
rs61959679	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959698	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959702	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959706	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959707	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959784	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331858	0.87[ASN][1000 genomes]
rs7983047	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526881	0.86[ASN][1000 genomes]
rs9526888	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526890	1.00[ASN][1000 genomes]
rs9526892	1.00[ASN][1000 genomes]
rs9526895	1.00[ASN][1000 genomes]
rs9526896	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526897	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526898	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526901	1.00[ASN][1000 genomes]
rs9526902	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526903	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526905	0.86[ASN][1000 genomes]
rs9526906	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526908	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526909	1.00[ASN][1000 genomes]
rs9526910	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526915	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526916	1.00[ASN][1000 genomes]
rs9526924	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526926	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535975	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535991	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536003	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9536004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536005	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536007	0.86[ASN][1000 genomes]
rs9536008	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536018	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536019	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536020	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536022	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536023	1.00[ASN][1000 genomes]
rs9536025	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536026	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536027	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536028	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536029	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536031	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536033	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536034	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536036	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536037	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536038	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536039	0.80[EUR][1000 genomes]
rs9536040	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536041	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536042	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536043	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536044	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536045	0.84[EUR][1000 genomes]
rs9536047	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536049	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536050	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536051	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536053	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536054	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536056	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536057	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536058	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536059	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536060	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536061	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536062	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536063	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536064	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536065	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536067	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536068	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536070	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536072	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536073	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536074	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536075	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536076	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536077	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536078	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536080	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536081	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536083	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536084	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536085	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536087	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536088	1.00[ASN][1000 genomes]
rs9536090	0.80[EUR][1000 genomes]
rs9536097	0.80[EUR][1000 genomes]
rs9536098	0.81[EUR][1000 genomes]
rs9536099	0.80[EUR][1000 genomes]
rs9596645	1.00[ASN][1000 genomes]
rs9741870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2453475	chr13:52803686-52895029	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	esv18620	chr13:52883467-52894884	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv977242	chr13:52883476-52898284	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
10	nsv974132	chr13:52885130-52898284	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9526882	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52884600-52895400	Weak transcription	K562	blood

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