Variant report

Variant	rs9536097
Chromosome Location	chr13:53057556-53057557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 175 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs1053245	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11148250	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11148251	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12184815	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28589286	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28756262	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34355831	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35975899	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41292810	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs41292818	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55850688	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56173235	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56249382	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57412438	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57831032	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57904860	0.80[EUR][1000 genomes]
rs58655347	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61011708	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61171418	0.83[AMR][1000 genomes]
rs61677410	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61957967	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957980	0.83[AMR][1000 genomes]
rs61957981	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957982	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957983	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957984	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957986	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957987	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957988	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957989	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957993	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61957995	0.80[EUR][1000 genomes]
rs61957996	0.86[EUR][1000 genomes]
rs61957997	0.80[EUR][1000 genomes]
rs61958009	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958010	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958011	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61958012	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958013	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958014	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958016	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958017	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61958018	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958019	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61958020	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61958024	0.83[EUR][1000 genomes]
rs61958026	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61958048	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958049	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958051	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958052	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61958053	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61958055	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958057	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958058	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61958059	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959660	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61959661	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959663	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959664	0.90[AMR][1000 genomes]
rs61959666	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959667	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959668	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61959669	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959670	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959672	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959673	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61959674	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61959675	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959676	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959677	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61959679	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61959698	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959702	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61959706	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61959707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61959708	0.87[EUR][1000 genomes]
rs61959711	0.86[ASN][1000 genomes]
rs61959784	0.80[AMR][1000 genomes]
rs9526882	0.80[EUR][1000 genomes]
rs9526888	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526896	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526897	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526898	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526901	1.00[AMR][1000 genomes]
rs9526902	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526903	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526906	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526908	0.80[EUR][1000 genomes]
rs9526909	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9526910	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9526915	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526916	0.90[AMR][1000 genomes]
rs9526924	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9535975	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536003	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536004	0.80[EUR][1000 genomes]
rs9536005	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9536008	0.86[EUR][1000 genomes]
rs9536009	0.80[EUR][1000 genomes]
rs9536018	0.86[EUR][1000 genomes]
rs9536019	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536020	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536022	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536023	0.90[AMR][1000 genomes]
rs9536025	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536026	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536027	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536028	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536029	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536031	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536033	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536034	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536036	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536037	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536038	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536039	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536040	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536041	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536042	0.86[EUR][1000 genomes]
rs9536043	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536044	0.80[EUR][1000 genomes]
rs9536047	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536049	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536050	0.83[AMR][1000 genomes]
rs9536051	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536053	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536054	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536056	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536057	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536058	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536059	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536060	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536061	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536062	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536063	0.86[EUR][1000 genomes]
rs9536064	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536065	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536067	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536068	0.86[EUR][1000 genomes]
rs9536070	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536072	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536073	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536074	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536075	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536076	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536077	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536078	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536080	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536081	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536083	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536084	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536085	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536088	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9536090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536098	0.87[EUR][1000 genomes]
rs9536099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9536153	0.86[ASN][1000 genomes]
rs9536167	0.86[ASN][1000 genomes]
rs9536168	0.86[ASN][1000 genomes]
rs9536169	0.86[ASN][1000 genomes]
rs9536170	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv900086	chr13:53030565-53208030	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv976117	chr13:53051476-53058376	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2421964	chr13:53051526-53160234	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1038132	chr13:53057359-53190994	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536097	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53050000-53058800	Weak transcription	HepG2	liver

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