Variant report

Variant	rs61957307
Chromosome Location	chr13:52803479-52803480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 214 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs1053245	1.00[ASN][1000 genomes]
rs11148250	1.00[ASN][1000 genomes]
rs11148251	1.00[ASN][1000 genomes]
rs12184815	0.87[ASN][1000 genomes]
rs17087405	1.00[ASN][1000 genomes]
rs28589286	1.00[ASN][1000 genomes]
rs28756262	1.00[ASN][1000 genomes]
rs34355831	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35975899	1.00[ASN][1000 genomes]
rs41292810	1.00[ASN][1000 genomes]
rs41292818	1.00[ASN][1000 genomes]
rs55715265	0.90[EUR][1000 genomes]
rs55850688	1.00[ASN][1000 genomes]
rs56173235	1.00[ASN][1000 genomes]
rs56249382	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57412438	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57831032	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57904860	1.00[ASN][1000 genomes]
rs58655347	1.00[ASN][1000 genomes]
rs60322427	1.00[ASN][1000 genomes]
rs60406129	1.00[ASN][1000 genomes]
rs61011708	1.00[ASN][1000 genomes]
rs61171418	1.00[ASN][1000 genomes]
rs61677410	1.00[ASN][1000 genomes]
rs61957231	0.84[EUR][1000 genomes]
rs61957232	0.84[EUR][1000 genomes]
rs61957238	0.87[EUR][1000 genomes]
rs61957248	0.87[EUR][1000 genomes]
rs61957252	0.87[EUR][1000 genomes]
rs61957253	0.87[EUR][1000 genomes]
rs61957254	0.87[EUR][1000 genomes]
rs61957255	0.84[EUR][1000 genomes]
rs61957256	0.87[EUR][1000 genomes]
rs61957966	0.87[ASN][1000 genomes]
rs61957967	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61957976	1.00[ASN][1000 genomes]
rs61957977	1.00[ASN][1000 genomes]
rs61957978	1.00[ASN][1000 genomes]
rs61957980	1.00[ASN][1000 genomes]
rs61957981	1.00[ASN][1000 genomes]
rs61957982	1.00[ASN][1000 genomes]
rs61957983	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61957984	1.00[ASN][1000 genomes]
rs61957986	1.00[ASN][1000 genomes]
rs61957987	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61957988	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61957989	1.00[ASN][1000 genomes]
rs61957993	1.00[ASN][1000 genomes]
rs61957995	1.00[ASN][1000 genomes]
rs61957996	1.00[ASN][1000 genomes]
rs61957997	1.00[ASN][1000 genomes]
rs61958009	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61958010	1.00[ASN][1000 genomes]
rs61958011	1.00[ASN][1000 genomes]
rs61958012	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61958013	1.00[ASN][1000 genomes]
rs61958014	1.00[ASN][1000 genomes]
rs61958016	1.00[ASN][1000 genomes]
rs61958017	1.00[ASN][1000 genomes]
rs61958018	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61958019	1.00[ASN][1000 genomes]
rs61958020	1.00[ASN][1000 genomes]
rs61958023	1.00[ASN][1000 genomes]
rs61958024	1.00[ASN][1000 genomes]
rs61958026	1.00[ASN][1000 genomes]
rs61958048	1.00[ASN][1000 genomes]
rs61958049	1.00[ASN][1000 genomes]
rs61958051	1.00[ASN][1000 genomes]
rs61958052	1.00[ASN][1000 genomes]
rs61958053	1.00[ASN][1000 genomes]
rs61958055	1.00[ASN][1000 genomes]
rs61958057	1.00[ASN][1000 genomes]
rs61958058	1.00[ASN][1000 genomes]
rs61958059	1.00[ASN][1000 genomes]
rs61958806	0.87[EUR][1000 genomes]
rs61958807	0.87[EUR][1000 genomes]
rs61958860	0.87[EUR][1000 genomes]
rs61958863	0.87[EUR][1000 genomes]
rs61958865	0.87[EUR][1000 genomes]
rs61959660	1.00[ASN][1000 genomes]
rs61959661	1.00[ASN][1000 genomes]
rs61959663	1.00[ASN][1000 genomes]
rs61959664	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61959666	1.00[ASN][1000 genomes]
rs61959667	1.00[ASN][1000 genomes]
rs61959668	1.00[ASN][1000 genomes]
rs61959669	1.00[ASN][1000 genomes]
rs61959670	1.00[ASN][1000 genomes]
rs61959672	1.00[ASN][1000 genomes]
rs61959673	1.00[ASN][1000 genomes]
rs61959674	1.00[ASN][1000 genomes]
rs61959675	1.00[ASN][1000 genomes]
rs61959676	1.00[ASN][1000 genomes]
rs61959677	1.00[ASN][1000 genomes]
rs61959679	1.00[ASN][1000 genomes]
rs61959698	1.00[ASN][1000 genomes]
rs61959702	1.00[ASN][1000 genomes]
rs61959706	1.00[ASN][1000 genomes]
rs61959707	1.00[ASN][1000 genomes]
rs61959784	1.00[ASN][1000 genomes]
rs719349	0.87[EUR][1000 genomes]
rs7331858	0.87[ASN][1000 genomes]
rs7333070	0.90[EUR][1000 genomes]
rs7983047	1.00[ASN][1000 genomes]
rs9526881	0.86[ASN][1000 genomes]
rs9526882	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526888	1.00[ASN][1000 genomes]
rs9526890	1.00[ASN][1000 genomes]
rs9526892	1.00[ASN][1000 genomes]
rs9526895	1.00[ASN][1000 genomes]
rs9526896	1.00[ASN][1000 genomes]
rs9526897	1.00[ASN][1000 genomes]
rs9526898	1.00[ASN][1000 genomes]
rs9526901	1.00[ASN][1000 genomes]
rs9526902	1.00[ASN][1000 genomes]
rs9526903	1.00[ASN][1000 genomes]
rs9526905	0.86[ASN][1000 genomes]
rs9526906	1.00[ASN][1000 genomes]
rs9526908	1.00[ASN][1000 genomes]
rs9526909	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9526910	1.00[ASN][1000 genomes]
rs9526915	1.00[ASN][1000 genomes]
rs9526916	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9526924	1.00[ASN][1000 genomes]
rs9526926	1.00[ASN][1000 genomes]
rs9535838	0.81[EUR][1000 genomes]
rs9535839	0.87[EUR][1000 genomes]
rs9535850	0.87[EUR][1000 genomes]
rs9535859	0.81[EUR][1000 genomes]
rs9535869	0.84[EUR][1000 genomes]
rs9535870	0.84[EUR][1000 genomes]
rs9535875	0.84[EUR][1000 genomes]
rs9535886	0.83[EUR][1000 genomes]
rs9535892	0.87[EUR][1000 genomes]
rs9535897	0.87[EUR][1000 genomes]
rs9535900	0.87[EUR][1000 genomes]
rs9535901	0.87[EUR][1000 genomes]
rs9535902	0.87[EUR][1000 genomes]
rs9535910	0.87[EUR][1000 genomes]
rs9535911	0.87[EUR][1000 genomes]
rs9535913	0.87[EUR][1000 genomes]
rs9535975	1.00[ASN][1000 genomes]
rs9535991	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536003	0.87[ASN][1000 genomes]
rs9536004	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536005	1.00[ASN][1000 genomes]
rs9536007	0.86[ASN][1000 genomes]
rs9536008	1.00[ASN][1000 genomes]
rs9536009	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536018	1.00[ASN][1000 genomes]
rs9536019	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536020	1.00[ASN][1000 genomes]
rs9536022	1.00[ASN][1000 genomes]
rs9536023	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536025	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536026	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536027	1.00[ASN][1000 genomes]
rs9536028	1.00[ASN][1000 genomes]
rs9536029	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536031	1.00[ASN][1000 genomes]
rs9536033	1.00[ASN][1000 genomes]
rs9536034	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536036	1.00[ASN][1000 genomes]
rs9536037	1.00[ASN][1000 genomes]
rs9536038	1.00[ASN][1000 genomes]
rs9536040	1.00[ASN][1000 genomes]
rs9536041	1.00[ASN][1000 genomes]
rs9536042	1.00[ASN][1000 genomes]
rs9536043	1.00[ASN][1000 genomes]
rs9536044	0.86[ASN][1000 genomes]
rs9536047	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536049	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536050	1.00[ASN][1000 genomes]
rs9536051	1.00[ASN][1000 genomes]
rs9536053	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536054	1.00[ASN][1000 genomes]
rs9536056	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536057	1.00[ASN][1000 genomes]
rs9536058	1.00[ASN][1000 genomes]
rs9536059	1.00[ASN][1000 genomes]
rs9536060	1.00[ASN][1000 genomes]
rs9536061	1.00[ASN][1000 genomes]
rs9536062	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9536063	1.00[ASN][1000 genomes]
rs9536064	1.00[ASN][1000 genomes]
rs9536065	1.00[ASN][1000 genomes]
rs9536067	1.00[ASN][1000 genomes]
rs9536068	1.00[ASN][1000 genomes]
rs9536070	1.00[ASN][1000 genomes]
rs9536072	1.00[ASN][1000 genomes]
rs9536073	1.00[ASN][1000 genomes]
rs9536074	1.00[ASN][1000 genomes]
rs9536075	1.00[ASN][1000 genomes]
rs9536076	1.00[ASN][1000 genomes]
rs9536077	1.00[ASN][1000 genomes]
rs9536078	1.00[ASN][1000 genomes]
rs9536080	1.00[ASN][1000 genomes]
rs9536081	1.00[ASN][1000 genomes]
rs9536083	1.00[ASN][1000 genomes]
rs9536084	1.00[ASN][1000 genomes]
rs9536085	1.00[ASN][1000 genomes]
rs9536087	1.00[ASN][1000 genomes]
rs9536088	1.00[ASN][1000 genomes]
rs9536098	0.84[AMR][1000 genomes]
rs9596645	1.00[ASN][1000 genomes]
rs9741870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv983588	chr13:52772461-52833538	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
8	nsv900083	chr13:52783120-52885838	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52803200-52803600	Enhancers	HUVEC	blood vessel

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