Variant report

Variant	rs9535960
Chromosome Location	chr13:52857111-52857112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 203 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs1053245	1.00[ASN][1000 genomes]
rs11148250	1.00[ASN][1000 genomes]
rs11148251	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184815	0.87[ASN][1000 genomes]
rs17087405	1.00[ASN][1000 genomes]
rs2478956	1.00[JPT][hapmap]
rs2768118	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs28589286	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756262	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34355831	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35975899	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809374	1.00[JPT][hapmap]
rs41292810	1.00[ASN][1000 genomes]
rs41292818	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941729	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs55850688	1.00[ASN][1000 genomes]
rs56173235	1.00[ASN][1000 genomes]
rs56249382	1.00[ASN][1000 genomes]
rs57412438	1.00[ASN][1000 genomes]
rs57831032	1.00[ASN][1000 genomes]
rs57904860	1.00[ASN][1000 genomes]
rs58655347	1.00[ASN][1000 genomes]
rs60322427	1.00[ASN][1000 genomes]
rs60406129	1.00[ASN][1000 genomes]
rs61011708	1.00[ASN][1000 genomes]
rs61171418	1.00[ASN][1000 genomes]
rs61677410	1.00[ASN][1000 genomes]
rs61957307	1.00[ASN][1000 genomes]
rs61957966	0.87[ASN][1000 genomes]
rs61957967	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957976	1.00[ASN][1000 genomes]
rs61957977	1.00[ASN][1000 genomes]
rs61957978	1.00[ASN][1000 genomes]
rs61957980	1.00[ASN][1000 genomes]
rs61957981	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957982	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957983	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957984	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957986	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957987	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957988	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957989	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957993	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957995	1.00[ASN][1000 genomes]
rs61957996	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61957997	1.00[ASN][1000 genomes]
rs61958009	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958010	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958011	1.00[ASN][1000 genomes]
rs61958012	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958013	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958014	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958016	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958017	1.00[ASN][1000 genomes]
rs61958018	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958019	1.00[ASN][1000 genomes]
rs61958020	1.00[ASN][1000 genomes]
rs61958023	1.00[ASN][1000 genomes]
rs61958024	1.00[ASN][1000 genomes]
rs61958026	1.00[ASN][1000 genomes]
rs61958048	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958049	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958051	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958052	1.00[ASN][1000 genomes]
rs61958053	1.00[ASN][1000 genomes]
rs61958055	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958057	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958058	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958059	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959660	1.00[ASN][1000 genomes]
rs61959661	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959663	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959664	1.00[ASN][1000 genomes]
rs61959666	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959667	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959668	1.00[ASN][1000 genomes]
rs61959669	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959670	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959672	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959673	1.00[ASN][1000 genomes]
rs61959674	1.00[ASN][1000 genomes]
rs61959675	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959676	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959677	1.00[ASN][1000 genomes]
rs61959679	1.00[ASN][1000 genomes]
rs61959698	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959702	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959706	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959707	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959784	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325826	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7331858	0.87[ASN][1000 genomes]
rs7983047	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526840	1.00[JPT][hapmap]
rs9526852	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9526881	0.86[ASN][1000 genomes]
rs9526882	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526888	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526890	1.00[ASN][1000 genomes]
rs9526892	1.00[ASN][1000 genomes]
rs9526895	1.00[ASN][1000 genomes]
rs9526896	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526897	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526898	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526901	1.00[ASN][1000 genomes]
rs9526902	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526903	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526905	0.86[ASN][1000 genomes]
rs9526906	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526908	1.00[ASN][1000 genomes]
rs9526909	1.00[ASN][1000 genomes]
rs9526910	1.00[ASN][1000 genomes]
rs9526915	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526916	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9526924	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526926	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535875	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535886	1.00[JPT][hapmap]
rs9535890	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535892	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535893	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535894	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535900	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535901	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535902	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9535910	1.00[JPT][hapmap]
rs9535975	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535991	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536003	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9536004	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536005	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536007	0.86[ASN][1000 genomes]
rs9536008	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536009	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536018	1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536019	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536020	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536022	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536023	1.00[ASN][1000 genomes]
rs9536025	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536026	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536027	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536028	1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536029	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536031	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536033	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536034	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536036	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536037	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536038	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536039	0.80[EUR][1000 genomes]
rs9536040	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9536041	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536042	1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536043	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536044	0.86[ASN][1000 genomes]
rs9536047	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536049	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536050	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9536051	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9536053	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536054	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536056	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536057	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9536058	1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536059	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536060	1.00[ASN][1000 genomes]
rs9536061	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9536062	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536063	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536064	1.00[ASN][1000 genomes]
rs9536065	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536067	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536068	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536070	1.00[ASN][1000 genomes]
rs9536072	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536073	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536074	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536075	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9536076	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536077	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536078	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536080	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536081	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536083	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536084	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9536085	1.00[ASN][1000 genomes]
rs9536087	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536088	1.00[ASN][1000 genomes]
rs9536090	0.80[EUR][1000 genomes]
rs9536097	0.80[EUR][1000 genomes]
rs9536099	0.80[EUR][1000 genomes]
rs9596645	1.00[ASN][1000 genomes]
rs9741870	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900083	chr13:52783120-52885838	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2453475	chr13:52803686-52895029	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv983630	chr13:52837032-52883476	Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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