Variant report

Variant	rs9316583
Chromosome Location	chr13:53254639-53254640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53253633..53256352-chr13:53264459..53267100,2	K562	blood:

Extended variants
information (count: 256 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:243)

rs_ID	r²[population]
rs1036452	0.93[EUR][1000 genomes]
rs11148261	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148262	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370082	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370083	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436724	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436725	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1436728	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436729	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186900	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925135	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978805	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033680	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033684	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033685	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099547	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237106	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408659	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2575957	0.81[EUR][1000 genomes]
rs2575958	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575975	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760755	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760774	0.87[ASN][1000 genomes]
rs2760780	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760801	0.82[CEU][hapmap]
rs342769	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342772	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342773	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342774	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342777	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385713	1.00[ASN][1000 genomes]
rs35799542	1.00[ASN][1000 genomes]
rs35975091	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3931491	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3989920	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261418	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261419	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278636	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539485	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542538	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586310	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884223	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884629	1.00[CEU][hapmap]
rs4885767	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885804	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885827	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885887	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885910	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885948	1.00[JPT][hapmap]
rs58007072	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58093707	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58762582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596546	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60117820	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601596	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602743	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60277273	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602954	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603070	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623593	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615509	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617660	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958087	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958115	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958120	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958121	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958122	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958123	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958126	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958127	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958131	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958134	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958135	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958136	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958137	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958138	0.87[ASN][1000 genomes]
rs61958139	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958140	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958141	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958142	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959576	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959578	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959579	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959591	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959592	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959594	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959595	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959654	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959659	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61961160	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630180	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630892	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632146	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632528	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636035	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636509	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636511	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646144	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646498	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646911	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647377	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561672	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561673	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561674	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561676	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561677	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561678	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561679	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561685	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561686	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659247	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659848	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs662582	0.87[ASN][1000 genomes]
rs664827	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670291	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676306	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682343	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693991	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694275	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694846	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319451	0.82[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325840	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330193	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330361	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330755	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335270	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986540	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986877	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987162	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987405	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988145	0.93[EUR][1000 genomes]
rs7991651	0.80[AMR][1000 genomes]
rs7992165	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994651	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996692	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999466	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893070	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316581	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316582	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526948	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526949	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526957	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526958	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526960	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526964	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526966	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526970	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526973	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526976	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526978	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526986	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526988	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526991	1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526993	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526994	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526997	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536098	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536099	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536153	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536167	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9536168	0.93[EUR][1000 genomes]
rs9536170	0.96[EUR][1000 genomes]
rs9536172	0.86[ASN][1000 genomes]
rs9536173	0.86[ASN][1000 genomes]
rs9536175	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536176	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536177	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536179	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536180	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536181	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536182	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536183	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536184	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536187	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536188	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536189	0.85[EUR][1000 genomes]
rs9536192	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536193	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536194	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536195	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536196	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536205	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536206	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536209	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536216	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536218	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536221	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536222	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536228	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536232	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536235	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536238	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536240	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536241	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536243	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536244	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536245	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536246	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536248	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536249	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536250	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536251	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536253	1.00[ASN][1000 genomes]
rs9536255	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536256	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536257	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536259	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536260	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536261	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536266	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9568747	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9568748	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568752	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596671	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964946	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971513	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973198	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1044949	chr13:53071140-53289426	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1044051	chr13:53139132-53287023	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1038942	chr13:53139132-53289426	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1039911	chr13:53139132-53303074	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv1037189	chr13:53173013-53287060	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv541775	chr13:53173013-53287060	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv1047265	chr13:53173013-53311419	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv541776	chr13:53173013-53311419	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv900088	chr13:53250839-53274936	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9316583	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53227800-53260000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:53228200-53256400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:53229000-53276600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:53229200-53268000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:53229800-53255000	Weak transcription	Spleen	Spleen
6	chr13:53230200-53263600	Weak transcription	Stomach Mucosa	stomach
7	chr13:53230400-53266400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:53230600-53266400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr13:53230800-53277400	Weak transcription	Gastric	stomach
10	chr13:53231200-53262400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr13:53231800-53266400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr13:53235200-53276000	Weak transcription	Right Ventricle	heart
13	chr13:53236600-53255000	Weak transcription	Lung	lung
14	chr13:53236800-53255000	Weak transcription	Aorta	Aorta
15	chr13:53237200-53261800	Weak transcription	Fetal Brain Male	brain
16	chr13:53239000-53255600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:53239200-53265600	Weak transcription	Brain Angular Gyrus	brain
18	chr13:53239400-53255000	Weak transcription	Ovary	ovary
19	chr13:53240400-53255800	Strong transcription	GM12878-XiMat	blood
20	chr13:53240600-53255000	Weak transcription	Esophagus	oesophagus
21	chr13:53240600-53255000	Weak transcription	Pancreas	Pancrea
22	chr13:53240600-53264200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr13:53240600-53275800	Weak transcription	K562	blood
24	chr13:53242000-53255600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr13:53242600-53255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:53242600-53255000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:53242600-53258000	Weak transcription	Small Intestine	intestine
28	chr13:53242800-53278600	Weak transcription	Psoas Muscle	Psoas
29	chr13:53243200-53259000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr13:53243800-53258200	Weak transcription	NHEK	skin
31	chr13:53245400-53257200	Strong transcription	Primary B cells from cord blood	blood
32	chr13:53245400-53263800	Strong transcription	Dnd41	blood
33	chr13:53245600-53263600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr13:53248400-53265200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr13:53248600-53263400	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr13:53248600-53265200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr13:53249000-53256200	Strong transcription	Primary T cells from cord blood	blood
38	chr13:53249000-53257400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr13:53249000-53263400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr13:53249000-53263400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr13:53249000-53263600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr13:53249000-53266400	Strong transcription	Liver	Liver
43	chr13:53249000-53266400	Strong transcription	Fetal Intestine Large	intestine
44	chr13:53249000-53266600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr13:53249000-53267400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:53249200-53255800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr13:53249200-53257400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr13:53249200-53257800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr13:53249200-53259400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:53249200-53261000	Strong transcription	Adipose Nuclei	Adipose

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