Variant report

Variant	rs9536182
Chromosome Location	chr13:53172999-53173000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53028617..53031103-chr13:53172840..53175725,3	MCF-7	breast:
2	chr13:53172771..53175608-chr13:53190178..53193759,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136108	Chromatin interaction
ENSG00000139675	Chromatin interaction
ENSG00000250299	Chromatin interaction

Extended variants
information (count: 256 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:240)

rs_ID	r²[population]
rs1036452	1.00[EUR][1000 genomes]
rs11148261	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148262	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370083	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436725	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1436728	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436729	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978805	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118093	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257325	0.92[AMR][1000 genomes]
rs237106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408659	1.00[EUR][1000 genomes]
rs2575957	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2575958	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575975	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760755	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760774	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2760780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342769	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342772	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342773	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342777	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385713	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35799542	1.00[ASN][1000 genomes]
rs3931491	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3989920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884240	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885827	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885910	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58007072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58093707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58505888	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58762582	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596546	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60117820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601596	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60277273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602954	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603070	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623593	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311520	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615509	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617660	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958087	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958116	0.92[AFR][1000 genomes]
rs61958120	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958127	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958131	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958132	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958134	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958135	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958137	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958138	0.87[ASN][1000 genomes]
rs61958139	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958140	1.00[ASN][1000 genomes]
rs61958141	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958142	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959576	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959578	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959579	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959591	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959592	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959594	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959595	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959616	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959617	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959618	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959619	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959620	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959653	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959654	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959656	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959659	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61961160	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630180	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632146	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632528	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636035	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636509	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636511	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646498	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646911	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561673	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561674	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561676	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561677	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561678	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561684	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659247	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659848	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs662582	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs664827	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670291	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676306	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681165	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682343	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693991	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694846	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335270	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982285	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986877	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987405	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7991651	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7992165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995188	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000715	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893070	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316583	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526947	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526948	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526957	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526958	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526960	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526964	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526966	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526970	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526972	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526976	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526986	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526987	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526988	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526991	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526993	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526994	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526997	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536153	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9536167	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536169	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536170	0.90[EUR][1000 genomes]
rs9536171	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536172	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9536173	0.86[ASN][1000 genomes]
rs9536175	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536176	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536177	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536179	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536186	0.85[AFR][1000 genomes]
rs9536187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536188	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536189	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9536192	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536193	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536194	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536195	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536196	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536205	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536206	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536215	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536216	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536218	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536221	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536222	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536229	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536233	0.93[EUR][1000 genomes]
rs9536235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536237	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536238	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536243	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536246	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536248	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536249	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536251	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536253	1.00[ASN][1000 genomes]
rs9536255	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536256	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536257	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536260	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536261	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536264	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568747	1.00[ASN][1000 genomes]
rs9568748	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973198	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv900086	chr13:53030565-53208030	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1038132	chr13:53057359-53190994	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv1044949	chr13:53071140-53289426	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	esv2760295	chr13:53071152-53178504	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv900087	chr13:53119704-53208030	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv819201	chr13:53137490-53240330	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv1044051	chr13:53139132-53287023	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
14	nsv1038942	chr13:53139132-53289426	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv1039911	chr13:53139132-53303074	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	esv13738	chr13:53159859-53177755	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536182	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53161000-53173000	Weak transcription	Fetal Heart	heart
2	chr13:53168400-53173000	Weak transcription	Osteobl	bone
3	chr13:53169000-53174000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:53169400-53173200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:53171200-53173800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:53171400-53173000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:53171400-53174200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:53172000-53173200	Weak transcription	HepG2	liver
9	chr13:53172600-53173400	Enhancers	HUVEC	blood vessel
10	chr13:53172800-53173000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:53172800-53173000	Enhancers	Colon Smooth Muscle	Colon
12	chr13:53172800-53173000	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr13:53172800-53173000	Enhancers	NHEK	skin
14	chr13:53172800-53173200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:53172800-53173200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:53172800-53173200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr13:53172800-53173200	Enhancers	HMEC	breast
18	chr13:53172800-53173400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr13:53172800-53173400	Enhancers	Fetal Kidney	kidney
20	chr13:53172800-53173400	Enhancers	Fetal Muscle Leg	muscle
21	chr13:53172800-53173400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr13:53172800-53173800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:53172800-53173800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr13:53172800-53173800	Flanking Active TSS	Hela-S3	cervix

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