Variant report

Variant	rs61958142
Chromosome Location	chr13:53190402-53190403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:53190295-53190510	K562	blood:	n/a	n/a
2	POLR2A	chr13:53190008-53190408	Raji	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:53184666..53187320-chr13:53188643..53190811,2	K562	blood:
2	chr13:53028109..53029845-chr13:53190052..53193351,3	MCF-7	breast:
3	chr13:53189348..53193688-chr13:53225267..53228139,8	MCF-7	breast:

Variant related genes	Relation type
MRPS31P4	TF binding region
HNRNPA1L2	TF binding region
ENSG00000165416	Chromatin interaction
ENSG00000136108	Chromatin interaction

Extended variants
information (count: 256 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:237)

rs_ID	r²[population]
rs1036452	1.00[EUR][1000 genomes]
rs11148261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436725	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1436728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186900	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925135	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978805	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118093	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257325	0.85[AMR][1000 genomes]
rs237106	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408659	1.00[EUR][1000 genomes]
rs2575957	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2575958	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575975	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760755	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760774	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2760780	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342769	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342772	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342773	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342774	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342777	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385713	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35799542	1.00[ASN][1000 genomes]
rs3931491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3989920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261418	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586310	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884240	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885767	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885827	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885910	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58007072	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58093707	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58762582	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596546	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60117820	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601596	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602743	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60277273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602954	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603070	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623593	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311520	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615509	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617660	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958087	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958115	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958120	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958121	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958122	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958123	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958126	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958127	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958132	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958134	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958135	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958136	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958137	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958138	0.87[ASN][1000 genomes]
rs61958139	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958140	1.00[ASN][1000 genomes]
rs61958141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959576	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959578	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959579	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959591	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959592	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959594	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959595	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959616	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959617	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959618	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959619	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959620	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959653	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959654	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959656	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959659	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61961160	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630180	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630232	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636035	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636509	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636511	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646144	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646498	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646911	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647377	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561673	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561678	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659247	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659848	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs662582	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs664827	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670291	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681165	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682343	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693991	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694275	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694846	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695165	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319451	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982285	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986877	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987405	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988145	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7991651	0.86[EUR][1000 genomes]
rs7992165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893070	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316583	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526947	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526948	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526949	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526957	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526958	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526960	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526964	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526966	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526972	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526976	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526986	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526987	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526988	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526991	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526993	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526994	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526997	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536153	0.80[EUR][1000 genomes]
rs9536167	1.00[EUR][1000 genomes]
rs9536168	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536169	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536170	0.90[EUR][1000 genomes]
rs9536171	0.81[EUR][1000 genomes]
rs9536172	0.86[ASN][1000 genomes]
rs9536173	0.86[ASN][1000 genomes]
rs9536175	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536176	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536177	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536179	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536180	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536181	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536182	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536183	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536184	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536187	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536188	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536189	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9536192	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536193	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536194	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536196	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536205	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536206	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536209	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536215	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536218	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536221	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536229	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536233	0.93[EUR][1000 genomes]
rs9536235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536237	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536238	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536243	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536246	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536248	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536249	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536251	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536253	1.00[ASN][1000 genomes]
rs9536255	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536256	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536257	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536260	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536261	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536264	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568747	1.00[ASN][1000 genomes]
rs9568748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964946	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973198	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv900086	chr13:53030565-53208030	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1038132	chr13:53057359-53190994	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1044949	chr13:53071140-53289426	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv900087	chr13:53119704-53208030	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv819201	chr13:53137490-53240330	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv1044051	chr13:53139132-53287023	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	nsv1038942	chr13:53139132-53289426	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
13	nsv1039911	chr13:53139132-53303074	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
14	nsv1037189	chr13:53173013-53287060	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv541775	chr13:53173013-53287060	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	nsv1047265	chr13:53173013-53311419	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv541776	chr13:53173013-53311419	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
18	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
19	nsv976119	chr13:53176029-53218496	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53175000-53191000	Weak transcription	Fetal Stomach	stomach
2	chr13:53183600-53190600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:53184400-53190800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:53189200-53191200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:53189600-53190800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr13:53190000-53190600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr13:53190000-53190600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr13:53190000-53190600	Enhancers	Dnd41	blood
9	chr13:53190000-53190600	Enhancers	GM12878-XiMat	blood
10	chr13:53190000-53190800	Enhancers	Primary B cells from peripheral blood	blood
11	chr13:53190000-53190800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr13:53190000-53190800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr13:53190000-53190800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr13:53190000-53190800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:53190000-53190800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr13:53190000-53190800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr13:53190000-53190800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr13:53190000-53190800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:53190000-53190800	Enhancers	Thymus	Thymus
20	chr13:53190000-53190800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr13:53190000-53191000	Enhancers	Esophagus	oesophagus
22	chr13:53190000-53191000	Enhancers	HUVEC	blood vessel
23	chr13:53190200-53190600	Enhancers	K562	blood
24	chr13:53190200-53190800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr13:53190200-53190800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr13:53190200-53190800	Weak transcription	Brain Hippocampus Middle	brain
27	chr13:53190200-53190800	Enhancers	Fetal Muscle Trunk	muscle
28	chr13:53190400-53190600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr13:53190400-53190800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr13:53190400-53191200	Weak transcription	Gastric	stomach

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