Variant report

Variant	rs61959618
Chromosome Location	chr13:53263805-53263806
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LECT1-1	chr13:53263722-53263958	ENSG00000248190

Extended variants
information (count: 249 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs1036452	0.93[EUR][1000 genomes]
rs11148261	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148262	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370082	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370083	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436724	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436725	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1436728	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436729	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186900	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925135	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978805	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033680	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033684	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033685	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099547	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118093	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237106	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408659	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2575957	0.81[EUR][1000 genomes]
rs2575958	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575975	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760755	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760774	0.87[ASN][1000 genomes]
rs2760780	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342769	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342772	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342773	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342774	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342777	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385713	1.00[ASN][1000 genomes]
rs35799542	1.00[ASN][1000 genomes]
rs3931491	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3989920	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261418	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261419	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278636	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539485	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542538	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586310	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884223	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885767	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885804	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885827	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885887	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885910	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58007072	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58093707	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58762582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596546	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60117820	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601596	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602743	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60277273	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602954	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603070	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623593	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615509	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617660	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958087	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958115	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958120	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958121	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958122	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958123	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958126	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958127	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958131	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958134	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958135	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958136	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958137	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958138	0.87[ASN][1000 genomes]
rs61958139	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958140	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958141	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958142	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959576	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959578	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959579	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959591	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959592	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959594	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959595	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959654	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959659	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61961160	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630180	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630892	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632146	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632528	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636035	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636509	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636511	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646144	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646498	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646911	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647377	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561672	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561673	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561674	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561676	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561677	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561678	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561679	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561684	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561685	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561686	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659247	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659848	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs662582	0.87[ASN][1000 genomes]
rs664827	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670291	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676306	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682343	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693991	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694275	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694846	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319451	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325840	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330193	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330361	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330755	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335270	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986540	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986877	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987162	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987405	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988145	0.93[EUR][1000 genomes]
rs7991651	0.80[AMR][1000 genomes]
rs7992165	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994651	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995188	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996692	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999466	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000715	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893070	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316581	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316582	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526948	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526949	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526957	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526958	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526960	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526964	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526966	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526970	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526973	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526978	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526988	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526991	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526994	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536153	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9536167	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9536168	0.93[EUR][1000 genomes]
rs9536170	0.96[EUR][1000 genomes]
rs9536172	0.86[ASN][1000 genomes]
rs9536173	0.86[ASN][1000 genomes]
rs9536175	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536176	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536177	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536179	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536180	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536181	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536182	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536183	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536184	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536187	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536188	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536189	0.85[EUR][1000 genomes]
rs9536192	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536193	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536194	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536195	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536196	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536205	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536206	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536209	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536216	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536218	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536221	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536222	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536228	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536235	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536240	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536241	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536243	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536244	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536249	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536250	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536251	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536253	1.00[ASN][1000 genomes]
rs9536255	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536256	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536260	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536261	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536266	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9568747	1.00[ASN][1000 genomes]
rs9568748	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568752	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596671	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964946	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971513	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973198	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1044949	chr13:53071140-53289426	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1044051	chr13:53139132-53287023	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1038942	chr13:53139132-53289426	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1039911	chr13:53139132-53303074	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv1037189	chr13:53173013-53287060	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv541775	chr13:53173013-53287060	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv1047265	chr13:53173013-53311419	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv541776	chr13:53173013-53311419	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv900088	chr13:53250839-53274936	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv1833952	chr13:53262175-53274936	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61959618	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53229000-53276600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:53229200-53268000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:53230400-53266400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53230600-53266400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr13:53230800-53277400	Weak transcription	Gastric	stomach
6	chr13:53231800-53266400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr13:53235200-53276000	Weak transcription	Right Ventricle	heart
8	chr13:53239200-53265600	Weak transcription	Brain Angular Gyrus	brain
9	chr13:53240600-53264200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:53240600-53275800	Weak transcription	K562	blood
11	chr13:53242800-53278600	Weak transcription	Psoas Muscle	Psoas
12	chr13:53248400-53265200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr13:53248600-53265200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr13:53249000-53266400	Strong transcription	Liver	Liver
15	chr13:53249000-53266400	Strong transcription	Fetal Intestine Large	intestine
16	chr13:53249000-53266600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr13:53249000-53267400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:53249200-53265200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:53249800-53266000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr13:53250000-53265000	Weak transcription	Hela-S3	cervix
21	chr13:53250800-53266600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:53251400-53267400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr13:53254200-53275800	Weak transcription	Fetal Heart	heart
24	chr13:53254800-53273600	Weak transcription	Fetal Kidney	kidney
25	chr13:53255800-53273800	Weak transcription	A549	lung
26	chr13:53255800-53277600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr13:53256000-53270600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:53256000-53282600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr13:53256400-53269800	Weak transcription	Brain Substantia Nigra	brain
30	chr13:53256600-53266000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr13:53256600-53267200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:53256600-53297800	Weak transcription	Pancreas	Pancrea
33	chr13:53256800-53264800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:53256800-53265000	Weak transcription	Esophagus	oesophagus
35	chr13:53256800-53270000	Weak transcription	Fetal Brain Female	brain
36	chr13:53257000-53272000	Weak transcription	NHLF	lung
37	chr13:53259400-53265000	Weak transcription	Colonic Mucosa	Colon
38	chr13:53259400-53266800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:53259400-53268000	Strong transcription	HSMM	muscle
40	chr13:53259600-53267400	Weak transcription	Brain Germinal Matrix	brain
41	chr13:53259600-53271800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr13:53259800-53270200	Weak transcription	Spleen	Spleen
43	chr13:53260000-53277600	Weak transcription	Brain Hippocampus Middle	brain
44	chr13:53260200-53264800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr13:53260200-53265000	Weak transcription	Lung	lung
46	chr13:53260200-53266800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:53260200-53277600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr13:53260400-53267400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:53260400-53273800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:53260400-53279200	Weak transcription	Aorta	Aorta

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