Variant report
| Variant | rs9536253 |
|---|---|
| Chromosome Location | chr13:53292789-53292790 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:223)
| rs_ID | r2[population] |
|---|---|
| rs11148261 | 1.00[ASN][1000 genomes] |
| rs11148262 | 1.00[ASN][1000 genomes] |
| rs1370082 | 1.00[ASN][1000 genomes] |
| rs1370083 | 1.00[ASN][1000 genomes] |
| rs1436724 | 1.00[ASN][1000 genomes] |
| rs1436725 | 0.87[ASN][1000 genomes] |
| rs1436728 | 1.00[ASN][1000 genomes] |
| rs1436729 | 1.00[ASN][1000 genomes] |
| rs186900 | 1.00[ASN][1000 genomes] |
| rs1925135 | 1.00[ASN][1000 genomes] |
| rs1978805 | 1.00[ASN][1000 genomes] |
| rs2033680 | 1.00[ASN][1000 genomes] |
| rs2033684 | 1.00[ASN][1000 genomes] |
| rs2033685 | 1.00[ASN][1000 genomes] |
| rs2099547 | 1.00[ASN][1000 genomes] |
| rs2118093 | 1.00[ASN][1000 genomes] |
| rs237106 | 1.00[ASN][1000 genomes] |
| rs2575958 | 0.87[ASN][1000 genomes] |
| rs2575975 | 1.00[ASN][1000 genomes] |
| rs2760755 | 1.00[ASN][1000 genomes] |
| rs2760774 | 0.87[ASN][1000 genomes] |
| rs2760780 | 1.00[ASN][1000 genomes] |
| rs342769 | 1.00[ASN][1000 genomes] |
| rs342772 | 1.00[ASN][1000 genomes] |
| rs342773 | 1.00[ASN][1000 genomes] |
| rs342774 | 1.00[ASN][1000 genomes] |
| rs342777 | 1.00[ASN][1000 genomes] |
| rs34385713 | 1.00[ASN][1000 genomes] |
| rs35799542 | 1.00[ASN][1000 genomes] |
| rs3931491 | 1.00[ASN][1000 genomes] |
| rs3989920 | 1.00[ASN][1000 genomes] |
| rs4261418 | 1.00[ASN][1000 genomes] |
| rs4261419 | 1.00[ASN][1000 genomes] |
| rs4278636 | 1.00[ASN][1000 genomes] |
| rs4539485 | 1.00[ASN][1000 genomes] |
| rs4542538 | 1.00[ASN][1000 genomes] |
| rs4586310 | 1.00[ASN][1000 genomes] |
| rs4884223 | 1.00[ASN][1000 genomes] |
| rs4884240 | 1.00[ASN][1000 genomes] |
| rs4885767 | 1.00[ASN][1000 genomes] |
| rs4885804 | 1.00[ASN][1000 genomes] |
| rs4885827 | 1.00[ASN][1000 genomes] |
| rs4885887 | 1.00[ASN][1000 genomes] |
| rs4885910 | 1.00[ASN][1000 genomes] |
| rs58007072 | 1.00[ASN][1000 genomes] |
| rs58093707 | 1.00[ASN][1000 genomes] |
| rs58762582 | 1.00[ASN][1000 genomes] |
| rs596546 | 1.00[ASN][1000 genomes] |
| rs60117820 | 1.00[ASN][1000 genomes] |
| rs601596 | 1.00[ASN][1000 genomes] |
| rs602743 | 1.00[ASN][1000 genomes] |
| rs60277273 | 1.00[ASN][1000 genomes] |
| rs602954 | 1.00[ASN][1000 genomes] |
| rs603070 | 1.00[ASN][1000 genomes] |
| rs60623593 | 1.00[ASN][1000 genomes] |
| rs61311520 | 1.00[ASN][1000 genomes] |
| rs615509 | 1.00[ASN][1000 genomes] |
| rs617660 | 1.00[ASN][1000 genomes] |
| rs61958087 | 1.00[ASN][1000 genomes] |
| rs61958115 | 1.00[ASN][1000 genomes] |
| rs61958120 | 1.00[ASN][1000 genomes] |
| rs61958121 | 1.00[ASN][1000 genomes] |
| rs61958122 | 1.00[ASN][1000 genomes] |
| rs61958123 | 1.00[ASN][1000 genomes] |
| rs61958126 | 1.00[ASN][1000 genomes] |
| rs61958127 | 1.00[ASN][1000 genomes] |
| rs61958131 | 1.00[ASN][1000 genomes] |
| rs61958132 | 1.00[ASN][1000 genomes] |
| rs61958134 | 1.00[ASN][1000 genomes] |
| rs61958135 | 1.00[ASN][1000 genomes] |
| rs61958136 | 1.00[ASN][1000 genomes] |
| rs61958137 | 1.00[ASN][1000 genomes] |
| rs61958138 | 0.87[ASN][1000 genomes] |
| rs61958139 | 1.00[ASN][1000 genomes] |
| rs61958140 | 1.00[ASN][1000 genomes] |
| rs61958141 | 1.00[ASN][1000 genomes] |
| rs61958142 | 1.00[ASN][1000 genomes] |
| rs61959576 | 1.00[ASN][1000 genomes] |
| rs61959578 | 1.00[ASN][1000 genomes] |
| rs61959579 | 1.00[ASN][1000 genomes] |
| rs61959591 | 1.00[ASN][1000 genomes] |
| rs61959592 | 1.00[ASN][1000 genomes] |
| rs61959594 | 1.00[ASN][1000 genomes] |
| rs61959595 | 1.00[ASN][1000 genomes] |
| rs61959616 | 1.00[ASN][1000 genomes] |
| rs61959617 | 1.00[ASN][1000 genomes] |
| rs61959618 | 1.00[ASN][1000 genomes] |
| rs61959619 | 1.00[ASN][1000 genomes] |
| rs61959620 | 1.00[ASN][1000 genomes] |
| rs61959653 | 1.00[ASN][1000 genomes] |
| rs61959654 | 1.00[ASN][1000 genomes] |
| rs61959656 | 1.00[ASN][1000 genomes] |
| rs61959659 | 0.87[ASN][1000 genomes] |
| rs61961160 | 1.00[ASN][1000 genomes] |
| rs630180 | 1.00[ASN][1000 genomes] |
| rs630232 | 1.00[ASN][1000 genomes] |
| rs630892 | 1.00[ASN][1000 genomes] |
| rs632146 | 1.00[ASN][1000 genomes] |
| rs632528 | 1.00[ASN][1000 genomes] |
| rs636035 | 1.00[ASN][1000 genomes] |
| rs636509 | 1.00[ASN][1000 genomes] |
| rs636511 | 1.00[ASN][1000 genomes] |
| rs646144 | 1.00[ASN][1000 genomes] |
| rs646498 | 1.00[ASN][1000 genomes] |
| rs646911 | 1.00[ASN][1000 genomes] |
| rs647377 | 1.00[ASN][1000 genomes] |
| rs6561672 | 1.00[ASN][1000 genomes] |
| rs6561673 | 1.00[ASN][1000 genomes] |
| rs6561674 | 1.00[ASN][1000 genomes] |
| rs6561676 | 1.00[ASN][1000 genomes] |
| rs6561677 | 1.00[ASN][1000 genomes] |
| rs6561678 | 1.00[ASN][1000 genomes] |
| rs6561679 | 1.00[ASN][1000 genomes] |
| rs6561684 | 1.00[ASN][1000 genomes] |
| rs6561685 | 1.00[ASN][1000 genomes] |
| rs6561686 | 1.00[ASN][1000 genomes] |
| rs659247 | 1.00[ASN][1000 genomes] |
| rs659848 | 0.86[ASN][1000 genomes] |
| rs662582 | 0.87[ASN][1000 genomes] |
| rs664827 | 0.86[ASN][1000 genomes] |
| rs670291 | 1.00[ASN][1000 genomes] |
| rs676306 | 1.00[ASN][1000 genomes] |
| rs681165 | 1.00[ASN][1000 genomes] |
| rs682343 | 1.00[ASN][1000 genomes] |
| rs693991 | 1.00[ASN][1000 genomes] |
| rs694275 | 1.00[ASN][1000 genomes] |
| rs694846 | 1.00[ASN][1000 genomes] |
| rs695165 | 1.00[ASN][1000 genomes] |
| rs7319451 | 1.00[ASN][1000 genomes] |
| rs7325840 | 1.00[ASN][1000 genomes] |
| rs7330193 | 1.00[ASN][1000 genomes] |
| rs7330361 | 1.00[ASN][1000 genomes] |
| rs7330755 | 1.00[ASN][1000 genomes] |
| rs7335270 | 1.00[ASN][1000 genomes] |
| rs7982285 | 1.00[ASN][1000 genomes] |
| rs7986540 | 1.00[ASN][1000 genomes] |
| rs7986877 | 1.00[ASN][1000 genomes] |
| rs7987162 | 1.00[ASN][1000 genomes] |
| rs7987405 | 1.00[ASN][1000 genomes] |
| rs7992165 | 1.00[ASN][1000 genomes] |
| rs7994651 | 1.00[ASN][1000 genomes] |
| rs7995188 | 1.00[ASN][1000 genomes] |
| rs7996692 | 1.00[ASN][1000 genomes] |
| rs7999466 | 1.00[ASN][1000 genomes] |
| rs8000715 | 1.00[ASN][1000 genomes] |
| rs893070 | 1.00[ASN][1000 genomes] |
| rs9316581 | 1.00[ASN][1000 genomes] |
| rs9316582 | 1.00[ASN][1000 genomes] |
| rs9316583 | 1.00[ASN][1000 genomes] |
| rs9526947 | 1.00[ASN][1000 genomes] |
| rs9526948 | 1.00[ASN][1000 genomes] |
| rs9526949 | 1.00[ASN][1000 genomes] |
| rs9526957 | 1.00[ASN][1000 genomes] |
| rs9526958 | 1.00[ASN][1000 genomes] |
| rs9526960 | 1.00[ASN][1000 genomes] |
| rs9526964 | 1.00[ASN][1000 genomes] |
| rs9526966 | 1.00[ASN][1000 genomes] |
| rs9526970 | 1.00[ASN][1000 genomes] |
| rs9526972 | 1.00[ASN][1000 genomes] |
| rs9526973 | 1.00[ASN][1000 genomes] |
| rs9526976 | 1.00[ASN][1000 genomes] |
| rs9526978 | 1.00[ASN][1000 genomes] |
| rs9526986 | 1.00[ASN][1000 genomes] |
| rs9526987 | 1.00[ASN][1000 genomes] |
| rs9526988 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9526991 | 1.00[ASN][1000 genomes] |
| rs9526993 | 1.00[ASN][1000 genomes] |
| rs9526994 | 1.00[ASN][1000 genomes] |
| rs9526997 | 1.00[ASN][1000 genomes] |
| rs9536172 | 0.86[ASN][1000 genomes] |
| rs9536173 | 0.86[ASN][1000 genomes] |
| rs9536175 | 1.00[ASN][1000 genomes] |
| rs9536176 | 1.00[ASN][1000 genomes] |
| rs9536177 | 1.00[ASN][1000 genomes] |
| rs9536179 | 1.00[ASN][1000 genomes] |
| rs9536180 | 1.00[ASN][1000 genomes] |
| rs9536181 | 1.00[ASN][1000 genomes] |
| rs9536182 | 1.00[ASN][1000 genomes] |
| rs9536183 | 1.00[ASN][1000 genomes] |
| rs9536184 | 1.00[ASN][1000 genomes] |
| rs9536187 | 1.00[ASN][1000 genomes] |
| rs9536188 | 1.00[ASN][1000 genomes] |
| rs9536192 | 1.00[ASN][1000 genomes] |
| rs9536193 | 1.00[ASN][1000 genomes] |
| rs9536194 | 1.00[ASN][1000 genomes] |
| rs9536195 | 1.00[ASN][1000 genomes] |
| rs9536196 | 1.00[ASN][1000 genomes] |
| rs9536205 | 1.00[ASN][1000 genomes] |
| rs9536206 | 1.00[ASN][1000 genomes] |
| rs9536209 | 1.00[ASN][1000 genomes] |
| rs9536215 | 1.00[ASN][1000 genomes] |
| rs9536216 | 1.00[ASN][1000 genomes] |
| rs9536218 | 1.00[ASN][1000 genomes] |
| rs9536221 | 1.00[ASN][1000 genomes] |
| rs9536222 | 1.00[ASN][1000 genomes] |
| rs9536228 | 1.00[ASN][1000 genomes] |
| rs9536229 | 1.00[ASN][1000 genomes] |
| rs9536232 | 1.00[ASN][1000 genomes] |
| rs9536235 | 1.00[ASN][1000 genomes] |
| rs9536237 | 1.00[ASN][1000 genomes] |
| rs9536238 | 1.00[ASN][1000 genomes] |
| rs9536240 | 1.00[ASN][1000 genomes] |
| rs9536241 | 1.00[ASN][1000 genomes] |
| rs9536243 | 1.00[ASN][1000 genomes] |
| rs9536244 | 1.00[ASN][1000 genomes] |
| rs9536246 | 1.00[ASN][1000 genomes] |
| rs9536248 | 1.00[ASN][1000 genomes] |
| rs9536249 | 1.00[ASN][1000 genomes] |
| rs9536250 | 1.00[ASN][1000 genomes] |
| rs9536251 | 1.00[ASN][1000 genomes] |
| rs9536255 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9536256 | 1.00[ASN][1000 genomes] |
| rs9536257 | 1.00[ASN][1000 genomes] |
| rs9536260 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9536261 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9536264 | 1.00[ASN][1000 genomes] |
| rs9568747 | 1.00[ASN][1000 genomes] |
| rs9568748 | 1.00[ASN][1000 genomes] |
| rs9568752 | 1.00[ASN][1000 genomes] |
| rs9596671 | 1.00[ASN][1000 genomes] |
| rs964946 | 1.00[ASN][1000 genomes] |
| rs971513 | 1.00[ASN][1000 genomes] |
| rs973198 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040931 | chr13:52564792-53350914 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
| 2 | nsv541773 | chr13:52564792-53350914 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039911 | chr13:53139132-53303074 | Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 4 | nsv1047265 | chr13:53173013-53311419 | Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 5 | nsv541776 | chr13:53173013-53311419 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 6 | nsv530719 | chr13:53173014-53675953 | Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9536253 | CKAP2 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:53256600-53297800 | Weak transcription | Pancreas | Pancrea |
| 2 | chr13:53260800-53297000 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 3 | chr13:53272400-53297400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 4 | chr13:53280600-53294600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 5 | chr13:53283400-53294600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 6 | chr13:53286800-53310800 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 7 | chr13:53287000-53294600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 8 | chr13:53288400-53293400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 9 | chr13:53288600-53294400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
