Variant report

Variant	rs9526993
Chromosome Location	chr13:53303082-53303083
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 242 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:237)

rs_ID	r²[population]
rs1036452	0.93[EUR][1000 genomes]
rs11148261	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148262	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370082	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370083	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436724	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436725	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1436728	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436729	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186900	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925135	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978805	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033680	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033684	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033685	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099547	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs237106	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408659	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2575957	0.81[EUR][1000 genomes]
rs2575958	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575975	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760755	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760774	0.87[ASN][1000 genomes]
rs2760780	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342769	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342772	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342773	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342774	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs342777	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385713	1.00[ASN][1000 genomes]
rs35799542	1.00[ASN][1000 genomes]
rs3931491	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3989920	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261418	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261419	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278636	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539485	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542538	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4586310	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884223	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885767	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885804	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885827	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885887	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885948	1.00[JPT][hapmap]
rs58007072	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58093707	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58762582	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596546	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60117820	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601596	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602743	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60277273	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602954	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603070	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623593	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61311520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615509	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617660	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958087	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958115	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958121	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958122	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958123	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958126	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958127	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958131	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958132	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958134	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958135	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958136	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958137	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958138	0.87[ASN][1000 genomes]
rs61958139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958140	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958141	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958142	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959576	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959578	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959616	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959654	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61959659	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61961160	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630180	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630892	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632146	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632528	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636035	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636509	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636511	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646144	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646498	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646911	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647377	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561672	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561673	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561674	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561676	1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561677	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561678	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561679	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561684	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561685	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561686	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659247	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659848	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs662582	0.87[ASN][1000 genomes]
rs664827	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670291	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676306	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682343	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693991	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694275	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694846	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319451	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325840	1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330193	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330361	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330755	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335270	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986540	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986877	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987162	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987405	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988145	0.93[EUR][1000 genomes]
rs7992165	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994651	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996692	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999466	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893070	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316581	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316582	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316583	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526949	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526957	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526958	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526964	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526966	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526970	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526973	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526976	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526978	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526986	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526988	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526991	1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526994	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526997	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536153	0.86[EUR][1000 genomes]
rs9536167	0.93[EUR][1000 genomes]
rs9536168	0.93[EUR][1000 genomes]
rs9536170	0.96[EUR][1000 genomes]
rs9536172	0.86[ASN][1000 genomes]
rs9536173	0.86[ASN][1000 genomes]
rs9536175	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536176	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536177	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536179	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536180	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536181	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536182	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536183	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536184	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536187	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536188	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536189	0.85[EUR][1000 genomes]
rs9536192	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536193	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536194	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536195	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536209	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536216	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536221	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536222	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536228	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536229	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536232	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536233	1.00[EUR][1000 genomes]
rs9536235	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536238	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536240	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536241	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536243	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536244	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536245	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9536246	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536248	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536249	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536250	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536251	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536253	1.00[ASN][1000 genomes]
rs9536255	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536256	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536257	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536259	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9536260	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536261	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536266	0.83[AMR][1000 genomes]
rs9568747	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9568748	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568752	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596671	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964946	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971513	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973198	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1047265	chr13:53173013-53311419	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv541776	chr13:53173013-53311419	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9526993	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53286800-53310800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:53298400-53310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:53299000-53310400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:53300800-53304800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:53302600-53303200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:53302600-53303600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:53302600-53303800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:53302800-53303200	Flanking Active TSS	GM12878-XiMat	blood
9	chr13:53302800-53303400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:53302800-53303400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:53302800-53303600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:53302800-53303800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:53303000-53303200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:53303000-53303200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr13:53303000-53304800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links