The 2.0 version of rSNPBase

Variant report

Variant rs1436729
Chromosome Location chr13:53224998-53224999
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:53192000-53225000 Weak transcription Spleen Spleen
2 chr13:53192400-53225000 Weak transcription Right Ventricle heart
3 chr13:53192400-53225800 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr13:53192600-53225000 Weak transcription Osteobl bone
5 chr13:53193000-53225000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr13:53198600-53225000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr13:53200200-53225000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr13:53203400-53225400 Weak transcription Aorta Aorta
9 chr13:53204200-53225000 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr13:53204200-53225000 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr13:53204600-53226000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr13:53205200-53225000 Weak transcription A549 lung
13 chr13:53205800-53225000 Weak transcription Rectal Smooth Muscle rectum
14 chr13:53205800-53225600 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr13:53215400-53225000 Weak transcription Brain Hippocampus Middle brain
16 chr13:53215800-53225000 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr13:53215800-53225000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr13:53216400-53225000 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr13:53216400-53225800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr13:53216600-53225000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr13:53216600-53225200 Weak transcription Primary monocytes fromperipheralblood blood
22 chr13:53217000-53226000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr13:53218200-53225400 Weak transcription Primary B cells from cord blood blood
24 chr13:53218400-53225000 Weak transcription Primary T cells fromperipheralblood blood
25 chr13:53218600-53225400 Weak transcription Thymus Thymus
26 chr13:53218800-53225000 Weak transcription Primary T cells from cord blood blood
27 chr13:53219000-53225000 Weak transcription Primary hematopoietic stem cells blood
28 chr13:53219000-53225000 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr13:53219200-53225200 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr13:53220800-53225000 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr13:53221000-53225000 Weak transcription HMEC breast
32 chr13:53223400-53225200 Weak transcription Colonic Mucosa Colon
33 chr13:53223600-53225000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr13:53223800-53225000 Strong transcription Placenta Placenta
35 chr13:53224200-53225000 Strong transcription Esophagus oesophagus
36 chr13:53224400-53225000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr13:53224400-53225000 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr13:53224400-53225000 Genic enhancers Fetal Muscle Leg muscle
39 chr13:53224400-53225000 Weak transcription Stomach Smooth Muscle stomach
40 chr13:53224400-53225000 Weak transcription HSMMtube muscle
41 chr13:53224400-53225000 Genic enhancers HUVEC blood vessel
42 chr13:53224400-53225200 Enhancers Fetal Heart heart
43 chr13:53224400-53225200 Enhancers Right Atrium heart
44 chr13:53224400-53227800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr13:53224400-53228600 Active TSS H1 Cell Line embryonic stem cell
46 chr13:53224600-53225000 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr13:53224600-53225000 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
48 chr13:53224600-53225000 Active TSS Primary hematopoietic stem cells short term culture blood
49 chr13:53224600-53225000 Weak transcription Primary T helper cells fromperipheralblood blood
50 chr13:53224600-53225000 Genic enhancers Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015