Variant report

Variant	rs61958138
Chromosome Location	chr13:53182367-53182368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 233 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:214)

rs_ID	r²[population]
rs11148261	0.87[ASN][1000 genomes]
rs11148262	0.87[ASN][1000 genomes]
rs1370082	0.87[ASN][1000 genomes]
rs1370083	0.87[ASN][1000 genomes]
rs1436724	0.87[ASN][1000 genomes]
rs1436728	0.87[ASN][1000 genomes]
rs1436729	0.87[ASN][1000 genomes]
rs186900	0.87[ASN][1000 genomes]
rs1925135	0.87[ASN][1000 genomes]
rs1978805	0.87[ASN][1000 genomes]
rs2033680	0.87[ASN][1000 genomes]
rs2033684	0.87[ASN][1000 genomes]
rs2033685	0.87[ASN][1000 genomes]
rs2099547	0.87[ASN][1000 genomes]
rs2118093	0.87[ASN][1000 genomes]
rs237106	0.87[ASN][1000 genomes]
rs2575975	0.87[ASN][1000 genomes]
rs2760755	0.87[ASN][1000 genomes]
rs2760780	0.87[ASN][1000 genomes]
rs342769	0.87[ASN][1000 genomes]
rs342772	0.87[ASN][1000 genomes]
rs342773	0.87[ASN][1000 genomes]
rs342774	0.87[ASN][1000 genomes]
rs342777	0.87[ASN][1000 genomes]
rs34385713	0.87[ASN][1000 genomes]
rs35799542	0.87[ASN][1000 genomes]
rs3931491	0.87[ASN][1000 genomes]
rs3989920	0.87[ASN][1000 genomes]
rs4261418	0.87[ASN][1000 genomes]
rs4261419	0.87[ASN][1000 genomes]
rs4278636	0.87[ASN][1000 genomes]
rs4539485	0.87[ASN][1000 genomes]
rs4542538	0.87[ASN][1000 genomes]
rs4586310	0.87[ASN][1000 genomes]
rs4884223	0.87[ASN][1000 genomes]
rs4884240	0.87[ASN][1000 genomes]
rs4885767	0.87[ASN][1000 genomes]
rs4885804	0.87[ASN][1000 genomes]
rs4885827	0.87[ASN][1000 genomes]
rs4885887	0.87[ASN][1000 genomes]
rs4885910	0.87[ASN][1000 genomes]
rs58007072	0.87[ASN][1000 genomes]
rs58093707	0.87[ASN][1000 genomes]
rs58762582	0.87[ASN][1000 genomes]
rs596546	0.87[ASN][1000 genomes]
rs60117820	0.87[ASN][1000 genomes]
rs601596	0.87[ASN][1000 genomes]
rs602743	0.87[ASN][1000 genomes]
rs60277273	0.87[ASN][1000 genomes]
rs602954	0.87[ASN][1000 genomes]
rs603070	0.87[ASN][1000 genomes]
rs60623593	0.87[ASN][1000 genomes]
rs61311520	0.87[ASN][1000 genomes]
rs615509	0.87[ASN][1000 genomes]
rs617660	0.87[ASN][1000 genomes]
rs61958087	0.87[ASN][1000 genomes]
rs61958115	0.87[ASN][1000 genomes]
rs61958120	0.87[ASN][1000 genomes]
rs61958121	0.87[ASN][1000 genomes]
rs61958122	0.87[ASN][1000 genomes]
rs61958123	0.87[ASN][1000 genomes]
rs61958126	0.87[ASN][1000 genomes]
rs61958127	0.87[ASN][1000 genomes]
rs61958131	0.87[ASN][1000 genomes]
rs61958132	0.87[ASN][1000 genomes]
rs61958134	0.87[ASN][1000 genomes]
rs61958135	0.87[ASN][1000 genomes]
rs61958136	0.87[ASN][1000 genomes]
rs61958137	0.87[ASN][1000 genomes]
rs61958139	0.87[ASN][1000 genomes]
rs61958140	0.87[ASN][1000 genomes]
rs61958141	0.87[ASN][1000 genomes]
rs61958142	0.87[ASN][1000 genomes]
rs61959576	0.87[ASN][1000 genomes]
rs61959578	0.87[ASN][1000 genomes]
rs61959579	0.87[ASN][1000 genomes]
rs61959591	0.87[ASN][1000 genomes]
rs61959592	0.87[ASN][1000 genomes]
rs61959594	0.87[ASN][1000 genomes]
rs61959595	0.87[ASN][1000 genomes]
rs61959616	0.87[ASN][1000 genomes]
rs61959617	0.87[ASN][1000 genomes]
rs61959618	0.87[ASN][1000 genomes]
rs61959619	0.87[ASN][1000 genomes]
rs61959620	0.87[ASN][1000 genomes]
rs61959653	0.87[ASN][1000 genomes]
rs61959654	0.87[ASN][1000 genomes]
rs61959656	0.87[ASN][1000 genomes]
rs61961160	0.87[ASN][1000 genomes]
rs630180	0.87[ASN][1000 genomes]
rs630232	0.87[ASN][1000 genomes]
rs630892	0.87[ASN][1000 genomes]
rs632146	0.87[ASN][1000 genomes]
rs632528	0.87[ASN][1000 genomes]
rs636035	0.87[ASN][1000 genomes]
rs636509	0.87[ASN][1000 genomes]
rs636511	0.87[ASN][1000 genomes]
rs646144	0.87[ASN][1000 genomes]
rs646498	0.87[ASN][1000 genomes]
rs646911	0.87[ASN][1000 genomes]
rs647377	0.87[ASN][1000 genomes]
rs6561672	0.87[ASN][1000 genomes]
rs6561673	0.87[ASN][1000 genomes]
rs6561674	0.87[ASN][1000 genomes]
rs6561676	0.87[ASN][1000 genomes]
rs6561677	0.87[ASN][1000 genomes]
rs6561678	0.87[ASN][1000 genomes]
rs6561679	0.87[ASN][1000 genomes]
rs6561684	0.87[ASN][1000 genomes]
rs6561685	0.87[ASN][1000 genomes]
rs6561686	0.87[ASN][1000 genomes]
rs659247	0.87[ASN][1000 genomes]
rs670291	0.87[ASN][1000 genomes]
rs676306	0.87[ASN][1000 genomes]
rs681165	0.87[ASN][1000 genomes]
rs682343	0.87[ASN][1000 genomes]
rs693991	0.87[ASN][1000 genomes]
rs694275	0.87[ASN][1000 genomes]
rs694846	0.87[ASN][1000 genomes]
rs695165	0.87[ASN][1000 genomes]
rs7319451	0.87[ASN][1000 genomes]
rs7325840	0.87[ASN][1000 genomes]
rs7330193	0.87[ASN][1000 genomes]
rs7330361	0.87[ASN][1000 genomes]
rs7330755	0.87[ASN][1000 genomes]
rs7335270	0.87[ASN][1000 genomes]
rs7982285	0.87[ASN][1000 genomes]
rs7986540	0.87[ASN][1000 genomes]
rs7986877	0.87[ASN][1000 genomes]
rs7987162	0.87[ASN][1000 genomes]
rs7987405	0.87[ASN][1000 genomes]
rs7992165	0.87[ASN][1000 genomes]
rs7994651	0.87[ASN][1000 genomes]
rs7995188	0.87[ASN][1000 genomes]
rs7996692	0.87[ASN][1000 genomes]
rs7999466	0.87[ASN][1000 genomes]
rs8000715	0.87[ASN][1000 genomes]
rs893070	0.87[ASN][1000 genomes]
rs9316581	0.87[ASN][1000 genomes]
rs9316582	0.87[ASN][1000 genomes]
rs9316583	0.87[ASN][1000 genomes]
rs9526947	0.87[ASN][1000 genomes]
rs9526948	0.87[ASN][1000 genomes]
rs9526949	0.87[ASN][1000 genomes]
rs9526957	0.87[ASN][1000 genomes]
rs9526958	0.87[ASN][1000 genomes]
rs9526960	0.87[ASN][1000 genomes]
rs9526964	0.87[ASN][1000 genomes]
rs9526966	0.87[ASN][1000 genomes]
rs9526970	0.87[ASN][1000 genomes]
rs9526972	0.87[ASN][1000 genomes]
rs9526973	0.87[ASN][1000 genomes]
rs9526976	0.87[ASN][1000 genomes]
rs9526978	0.87[ASN][1000 genomes]
rs9526986	0.87[ASN][1000 genomes]
rs9526987	0.87[ASN][1000 genomes]
rs9526988	0.87[ASN][1000 genomes]
rs9526991	0.87[ASN][1000 genomes]
rs9526993	0.87[ASN][1000 genomes]
rs9526994	0.87[ASN][1000 genomes]
rs9526997	0.87[ASN][1000 genomes]
rs9536175	0.87[ASN][1000 genomes]
rs9536176	0.87[ASN][1000 genomes]
rs9536177	0.87[ASN][1000 genomes]
rs9536179	0.87[ASN][1000 genomes]
rs9536180	0.87[ASN][1000 genomes]
rs9536181	0.87[ASN][1000 genomes]
rs9536182	0.87[ASN][1000 genomes]
rs9536183	0.87[ASN][1000 genomes]
rs9536184	0.87[ASN][1000 genomes]
rs9536187	0.87[ASN][1000 genomes]
rs9536188	0.87[ASN][1000 genomes]
rs9536192	0.87[ASN][1000 genomes]
rs9536193	0.87[ASN][1000 genomes]
rs9536194	0.87[ASN][1000 genomes]
rs9536195	0.87[ASN][1000 genomes]
rs9536196	0.87[ASN][1000 genomes]
rs9536205	0.87[ASN][1000 genomes]
rs9536206	0.87[ASN][1000 genomes]
rs9536209	0.87[ASN][1000 genomes]
rs9536215	0.87[ASN][1000 genomes]
rs9536216	0.87[ASN][1000 genomes]
rs9536218	0.87[ASN][1000 genomes]
rs9536221	0.87[ASN][1000 genomes]
rs9536222	0.87[ASN][1000 genomes]
rs9536228	0.87[ASN][1000 genomes]
rs9536229	0.87[ASN][1000 genomes]
rs9536232	0.87[ASN][1000 genomes]
rs9536235	0.87[ASN][1000 genomes]
rs9536237	0.87[ASN][1000 genomes]
rs9536238	0.87[ASN][1000 genomes]
rs9536240	0.87[ASN][1000 genomes]
rs9536241	0.87[ASN][1000 genomes]
rs9536243	0.87[ASN][1000 genomes]
rs9536244	0.87[ASN][1000 genomes]
rs9536246	0.87[ASN][1000 genomes]
rs9536248	0.87[ASN][1000 genomes]
rs9536249	0.87[ASN][1000 genomes]
rs9536250	0.87[ASN][1000 genomes]
rs9536251	0.87[ASN][1000 genomes]
rs9536253	0.87[ASN][1000 genomes]
rs9536255	0.87[ASN][1000 genomes]
rs9536256	0.87[ASN][1000 genomes]
rs9536257	0.87[ASN][1000 genomes]
rs9536260	0.87[ASN][1000 genomes]
rs9536261	0.87[ASN][1000 genomes]
rs9536264	0.87[ASN][1000 genomes]
rs9568747	0.87[ASN][1000 genomes]
rs9568748	0.87[ASN][1000 genomes]
rs9568752	0.87[ASN][1000 genomes]
rs9596671	0.87[ASN][1000 genomes]
rs964946	0.87[ASN][1000 genomes]
rs971513	0.87[ASN][1000 genomes]
rs973198	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv900086	chr13:53030565-53208030	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1038132	chr13:53057359-53190994	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1044949	chr13:53071140-53289426	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv900087	chr13:53119704-53208030	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv819201	chr13:53137490-53240330	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv1044051	chr13:53139132-53287023	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	nsv1038942	chr13:53139132-53289426	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
13	nsv1039911	chr13:53139132-53303074	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
14	nsv1037189	chr13:53173013-53287060	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv541775	chr13:53173013-53287060	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	nsv1047265	chr13:53173013-53311419	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv541776	chr13:53173013-53311419	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
18	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
19	nsv976119	chr13:53176029-53218496	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53173800-53182400	Weak transcription	Fetal Heart	heart
2	chr13:53175000-53191000	Weak transcription	Fetal Stomach	stomach
3	chr13:53175200-53183200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53175200-53183200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr13:53177600-53182400	Weak transcription	HepG2	liver
6	chr13:53180000-53182600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:53181200-53190000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr13:53181800-53183000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:53182200-53182400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:53182200-53183200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:53182200-53183800	Enhancers	HUVEC	blood vessel

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