Variant report

Variant	rs9536171
Chromosome Location	chr13:53164178-53164179
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 171 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1036452	0.81[EUR][1000 genomes]
rs11148261	0.81[EUR][1000 genomes]
rs11148262	0.81[EUR][1000 genomes]
rs1370082	0.81[EUR][1000 genomes]
rs1370083	0.81[EUR][1000 genomes]
rs1436724	0.81[EUR][1000 genomes]
rs1436725	0.81[EUR][1000 genomes]
rs1436728	0.81[EUR][1000 genomes]
rs1436729	0.81[EUR][1000 genomes]
rs186900	0.81[EUR][1000 genomes]
rs1925135	0.81[EUR][1000 genomes]
rs1978805	0.81[EUR][1000 genomes]
rs2033680	0.81[EUR][1000 genomes]
rs2033684	0.81[EUR][1000 genomes]
rs2033685	0.81[EUR][1000 genomes]
rs2099547	0.81[EUR][1000 genomes]
rs237106	0.81[EUR][1000 genomes]
rs2408659	0.81[EUR][1000 genomes]
rs2575958	0.81[EUR][1000 genomes]
rs2760755	0.81[EUR][1000 genomes]
rs2760780	0.81[EUR][1000 genomes]
rs342769	0.81[EUR][1000 genomes]
rs342772	0.81[EUR][1000 genomes]
rs342773	0.81[EUR][1000 genomes]
rs342774	0.81[EUR][1000 genomes]
rs342777	0.81[EUR][1000 genomes]
rs3931491	0.81[EUR][1000 genomes]
rs3989920	0.81[EUR][1000 genomes]
rs4261418	0.81[EUR][1000 genomes]
rs4261419	0.81[EUR][1000 genomes]
rs4278636	0.81[EUR][1000 genomes]
rs4539485	0.81[EUR][1000 genomes]
rs4542538	0.81[EUR][1000 genomes]
rs4586310	0.81[EUR][1000 genomes]
rs4884223	0.81[EUR][1000 genomes]
rs4885767	0.81[EUR][1000 genomes]
rs4885804	0.81[EUR][1000 genomes]
rs4885827	0.81[EUR][1000 genomes]
rs4885887	0.81[EUR][1000 genomes]
rs4885910	0.81[EUR][1000 genomes]
rs58007072	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58093707	0.81[EUR][1000 genomes]
rs58505888	0.90[AFR][1000 genomes]
rs596546	0.81[EUR][1000 genomes]
rs60117820	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs601596	0.81[EUR][1000 genomes]
rs602743	0.81[EUR][1000 genomes]
rs60277273	0.81[EUR][1000 genomes]
rs602954	0.81[EUR][1000 genomes]
rs603070	0.81[EUR][1000 genomes]
rs60623593	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs615509	0.81[EUR][1000 genomes]
rs617660	0.81[EUR][1000 genomes]
rs61958087	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61958115	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61958116	0.87[AFR][1000 genomes]
rs61958121	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61958122	0.87[AFR][1000 genomes]
rs61958123	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61958126	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61958131	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61958132	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61958134	0.81[EUR][1000 genomes]
rs61958135	0.81[EUR][1000 genomes]
rs61958136	0.81[EUR][1000 genomes]
rs61958137	0.81[EUR][1000 genomes]
rs61958141	0.81[EUR][1000 genomes]
rs61958142	0.81[EUR][1000 genomes]
rs61959578	0.81[EUR][1000 genomes]
rs630180	0.81[EUR][1000 genomes]
rs630232	0.81[EUR][1000 genomes]
rs630892	0.81[EUR][1000 genomes]
rs632146	0.81[EUR][1000 genomes]
rs632528	0.81[EUR][1000 genomes]
rs636035	0.81[EUR][1000 genomes]
rs646144	0.81[EUR][1000 genomes]
rs646498	0.81[EUR][1000 genomes]
rs646911	0.81[EUR][1000 genomes]
rs647377	0.81[EUR][1000 genomes]
rs6561672	0.81[EUR][1000 genomes]
rs6561674	0.81[EUR][1000 genomes]
rs6561676	0.81[EUR][1000 genomes]
rs6561677	0.81[EUR][1000 genomes]
rs6561679	0.81[EUR][1000 genomes]
rs6561684	0.81[EUR][1000 genomes]
rs6561685	0.81[EUR][1000 genomes]
rs6561686	0.81[EUR][1000 genomes]
rs659247	0.81[EUR][1000 genomes]
rs670291	0.81[EUR][1000 genomes]
rs676306	0.81[EUR][1000 genomes]
rs681165	0.81[EUR][1000 genomes]
rs682343	0.81[EUR][1000 genomes]
rs693991	0.81[EUR][1000 genomes]
rs694275	0.81[EUR][1000 genomes]
rs694846	0.81[EUR][1000 genomes]
rs695165	0.81[EUR][1000 genomes]
rs7319451	0.81[EUR][1000 genomes]
rs7325840	0.81[EUR][1000 genomes]
rs7330193	0.81[EUR][1000 genomes]
rs7330361	0.81[EUR][1000 genomes]
rs7330755	0.81[EUR][1000 genomes]
rs7335270	0.81[EUR][1000 genomes]
rs7982285	0.81[EUR][1000 genomes]
rs7986540	0.81[EUR][1000 genomes]
rs7986877	0.81[EUR][1000 genomes]
rs7987162	0.81[EUR][1000 genomes]
rs7988145	0.81[EUR][1000 genomes]
rs7992165	0.81[EUR][1000 genomes]
rs7994651	0.81[EUR][1000 genomes]
rs7995188	0.81[EUR][1000 genomes]
rs7996692	0.81[EUR][1000 genomes]
rs7999466	0.81[EUR][1000 genomes]
rs8000715	0.81[EUR][1000 genomes]
rs893070	0.81[EUR][1000 genomes]
rs9316581	0.81[EUR][1000 genomes]
rs9316582	0.81[EUR][1000 genomes]
rs9526949	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9526958	0.81[EUR][1000 genomes]
rs9526970	0.81[EUR][1000 genomes]
rs9526973	0.81[EUR][1000 genomes]
rs9526978	0.81[EUR][1000 genomes]
rs9536167	0.81[EUR][1000 genomes]
rs9536168	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536169	0.88[AFR][1000 genomes]
rs9536176	0.81[EUR][1000 genomes]
rs9536177	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536179	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536180	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536181	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536182	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536183	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536184	0.81[EUR][1000 genomes]
rs9536186	0.87[AFR][1000 genomes]
rs9536187	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9536192	0.81[EUR][1000 genomes]
rs9536193	0.81[EUR][1000 genomes]
rs9536194	0.81[EUR][1000 genomes]
rs9536195	0.81[EUR][1000 genomes]
rs9536209	0.81[EUR][1000 genomes]
rs9536216	0.81[EUR][1000 genomes]
rs9536222	0.81[EUR][1000 genomes]
rs9536228	0.81[EUR][1000 genomes]
rs9536235	0.81[EUR][1000 genomes]
rs9536240	0.81[EUR][1000 genomes]
rs9536241	0.81[EUR][1000 genomes]
rs9536243	0.81[EUR][1000 genomes]
rs9536244	0.81[EUR][1000 genomes]
rs9536250	0.81[EUR][1000 genomes]
rs9568748	0.81[EUR][1000 genomes]
rs9568752	0.81[EUR][1000 genomes]
rs9596671	0.81[EUR][1000 genomes]
rs964946	0.81[EUR][1000 genomes]
rs971513	0.81[EUR][1000 genomes]
rs973198	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv900085	chr13:53022518-53216622	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv900086	chr13:53030565-53208030	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1038132	chr13:53057359-53190994	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv820041	chr13:53061338-53280588	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv1044949	chr13:53071140-53289426	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	esv2760295	chr13:53071152-53178504	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv900087	chr13:53119704-53208030	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv976118	chr13:53120951-53171671	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv819201	chr13:53137490-53240330	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv1044051	chr13:53139132-53287023	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
15	nsv1038942	chr13:53139132-53289426	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	nsv1039911	chr13:53139132-53303074	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
17	esv13738	chr13:53159859-53177755	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536171	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53161000-53173000	Weak transcription	Fetal Heart	heart

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