Variant report

Variant	rs73259533
Chromosome Location	chr12:4212981-4212982
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4211212..4213696-chr12:4362368..4364993,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11829820	1.00[AMR][1000 genomes]
rs11832475	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11834077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11834174	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11836558	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11837775	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931100	1.00[AMR][1000 genomes]
rs16931124	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36097138	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55787213	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55825747	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55891544	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56773631	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56891486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57196809	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57485269	0.85[AFR][1000 genomes]
rs58564884	0.85[AFR][1000 genomes]
rs58592888	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58736101	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58775468	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58927319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59549730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59746697	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59810408	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59914894	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59973578	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60036022	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60989334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73257568	1.00[AMR][1000 genomes]
rs73257583	1.00[AMR][1000 genomes]
rs73257588	0.83[AMR][1000 genomes]
rs73257592	1.00[AMR][1000 genomes]
rs73257597	1.00[AMR][1000 genomes]
rs73257599	1.00[AMR][1000 genomes]
rs73257601	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259530	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259531	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259538	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259546	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259551	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259553	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259574	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259577	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259578	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259581	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259582	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259591	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73261546	0.83[AFR][1000 genomes]
rs74061519	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061522	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv976559	chr12:4206772-4216198	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4211800-4215600	Weak transcription	Fetal Stomach	stomach

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