Variant report

Variant	rs73259538
Chromosome Location	chr12:4213705-4213706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11829820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11831112	0.96[AFR][1000 genomes]
rs11831812	1.00[ASN][1000 genomes]
rs11832475	1.00[AMR][1000 genomes]
rs11834077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11834174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11836558	1.00[AMR][1000 genomes]
rs11837775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11838249	1.00[ASN][1000 genomes]
rs1558614	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1558615	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16931100	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16931124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16931128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16931131	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931139	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16931141	1.00[ASN][1000 genomes]
rs2429453	1.00[ASN][1000 genomes]
rs2532531	0.87[ASN][1000 genomes]
rs2532532	1.00[ASN][1000 genomes]
rs2532533	1.00[ASN][1000 genomes]
rs2532535	1.00[ASN][1000 genomes]
rs2532575	1.00[ASN][1000 genomes]
rs2532576	1.00[ASN][1000 genomes]
rs2540143	1.00[ASN][1000 genomes]
rs2540144	1.00[ASN][1000 genomes]
rs2540145	1.00[ASN][1000 genomes]
rs2540146	1.00[ASN][1000 genomes]
rs2540147	1.00[ASN][1000 genomes]
rs2540150	1.00[ASN][1000 genomes]
rs2724206	0.82[ASN][1000 genomes]
rs2724231	1.00[ASN][1000 genomes]
rs2724232	1.00[ASN][1000 genomes]
rs2724233	1.00[ASN][1000 genomes]
rs36097138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4525313	1.00[ASN][1000 genomes]
rs55772551	1.00[ASN][1000 genomes]
rs55787213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55825747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55891544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56773631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56891486	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57196809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58592888	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58736101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58775468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58927319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59549730	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59746697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59810408	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59914894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59973578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60036022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60989334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257568	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257583	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257588	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257592	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257601	1.00[AMR][1000 genomes]
rs73259527	1.00[ASN][1000 genomes]
rs73259530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259533	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73259546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259596	1.00[ASN][1000 genomes]
rs74058994	1.00[ASN][1000 genomes]
rs74061519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74061522	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74061528	1.00[ASN][1000 genomes]
rs7973836	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv976559	chr12:4206772-4216198	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4211800-4215600	Weak transcription	Fetal Stomach	stomach

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