Variant report

Variant	rs2724206
Chromosome Location	chr12:4201134-4201135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11829820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11831812	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11834077	0.82[ASN][1000 genomes]
rs11834174	0.82[ASN][1000 genomes]
rs11838249	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1558614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1558615	0.82[ASN][1000 genomes]
rs16931100	0.82[ASN][1000 genomes]
rs16931124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16931128	0.82[ASN][1000 genomes]
rs16931139	0.82[ASN][1000 genomes]
rs16931141	0.82[ASN][1000 genomes]
rs2429453	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532531	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2532532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532535	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532575	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532576	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2540138	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2540143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2540144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2540145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2540146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2540147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2540150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2724231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2724232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2724233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2724238	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs36097138	0.82[ASN][1000 genomes]
rs4525313	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55772551	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55787213	0.82[ASN][1000 genomes]
rs55825747	0.82[ASN][1000 genomes]
rs55891544	0.82[ASN][1000 genomes]
rs56773631	0.82[ASN][1000 genomes]
rs57196809	0.82[ASN][1000 genomes]
rs58592888	0.82[ASN][1000 genomes]
rs58736101	0.82[ASN][1000 genomes]
rs58775468	0.82[ASN][1000 genomes]
rs58927319	0.82[ASN][1000 genomes]
rs59746697	0.82[ASN][1000 genomes]
rs59914894	0.82[ASN][1000 genomes]
rs59973578	0.82[ASN][1000 genomes]
rs60036022	0.82[ASN][1000 genomes]
rs60989334	0.82[ASN][1000 genomes]
rs73257568	0.82[ASN][1000 genomes]
rs73257583	0.82[ASN][1000 genomes]
rs73257588	0.82[ASN][1000 genomes]
rs73257592	0.82[ASN][1000 genomes]
rs73257597	0.82[ASN][1000 genomes]
rs73257599	0.82[ASN][1000 genomes]
rs73259527	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73259530	0.82[ASN][1000 genomes]
rs73259531	0.82[ASN][1000 genomes]
rs73259538	0.82[ASN][1000 genomes]
rs73259546	0.82[ASN][1000 genomes]
rs73259548	0.82[ASN][1000 genomes]
rs73259551	0.82[ASN][1000 genomes]
rs73259574	0.82[ASN][1000 genomes]
rs73259577	0.82[ASN][1000 genomes]
rs73259578	0.82[ASN][1000 genomes]
rs73259581	0.82[ASN][1000 genomes]
rs73259582	0.82[ASN][1000 genomes]
rs73259591	0.82[ASN][1000 genomes]
rs73259596	0.82[ASN][1000 genomes]
rs74058994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs74061519	0.82[ASN][1000 genomes]
rs74061528	0.82[ASN][1000 genomes]
rs7973836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4193000-4201200	Weak transcription	Lung	lung
2	chr12:4196800-4201200	Enhancers	Fetal Stomach	stomach
3	chr12:4199800-4201400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:4200000-4201200	Enhancers	Placenta	Placenta
5	chr12:4200000-4201200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr12:4200000-4201400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:4200000-4201600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:4200000-4201600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:4200200-4201400	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:4200200-4201400	Enhancers	Fetal Muscle Leg	muscle
11	chr12:4200400-4201400	Enhancers	Fetal Muscle Trunk	muscle
12	chr12:4200600-4201400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr12:4201000-4201400	Enhancers	Pancreas	Pancrea

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