Variant report

Variant	rs7973836
Chromosome Location	chr12:4215730-4215731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11829820	1.00[ASN][1000 genomes]
rs11831812	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11834077	1.00[ASN][1000 genomes]
rs11834174	1.00[ASN][1000 genomes]
rs11838249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1558614	1.00[ASN][1000 genomes]
rs1558615	1.00[ASN][1000 genomes]
rs16931100	1.00[ASN][1000 genomes]
rs16931124	1.00[ASN][1000 genomes]
rs16931128	1.00[ASN][1000 genomes]
rs16931139	1.00[ASN][1000 genomes]
rs16931141	1.00[ASN][1000 genomes]
rs2429453	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2532531	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2532532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2532533	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2532535	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2532575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2532576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2532578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2540138	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2540143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2540144	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2540145	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2540146	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2540147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2540150	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2724206	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2724231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2724232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2724233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2724238	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs36097138	1.00[ASN][1000 genomes]
rs4525313	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55772551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55787213	1.00[ASN][1000 genomes]
rs55825747	1.00[ASN][1000 genomes]
rs55891544	1.00[ASN][1000 genomes]
rs56773631	1.00[ASN][1000 genomes]
rs57196809	1.00[ASN][1000 genomes]
rs58592888	1.00[ASN][1000 genomes]
rs58736101	1.00[ASN][1000 genomes]
rs58775468	1.00[ASN][1000 genomes]
rs58927319	1.00[ASN][1000 genomes]
rs59746697	1.00[ASN][1000 genomes]
rs59914894	1.00[ASN][1000 genomes]
rs59973578	1.00[ASN][1000 genomes]
rs60036022	1.00[ASN][1000 genomes]
rs60989334	1.00[ASN][1000 genomes]
rs7315461	0.81[AFR][1000 genomes]
rs73257568	1.00[ASN][1000 genomes]
rs73257583	1.00[ASN][1000 genomes]
rs73257588	1.00[ASN][1000 genomes]
rs73257592	1.00[ASN][1000 genomes]
rs73257597	1.00[ASN][1000 genomes]
rs73257599	1.00[ASN][1000 genomes]
rs73259527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259530	1.00[ASN][1000 genomes]
rs73259531	1.00[ASN][1000 genomes]
rs73259538	1.00[ASN][1000 genomes]
rs73259545	0.86[ASN][1000 genomes]
rs73259546	1.00[ASN][1000 genomes]
rs73259548	1.00[ASN][1000 genomes]
rs73259551	1.00[ASN][1000 genomes]
rs73259574	1.00[ASN][1000 genomes]
rs73259577	1.00[ASN][1000 genomes]
rs73259578	1.00[ASN][1000 genomes]
rs73259581	1.00[ASN][1000 genomes]
rs73259582	1.00[ASN][1000 genomes]
rs73259591	1.00[ASN][1000 genomes]
rs73259596	1.00[ASN][1000 genomes]
rs74058994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74061519	1.00[ASN][1000 genomes]
rs74061528	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv976559	chr12:4206772-4216198	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4214000-4216400	Enhancers	Fetal Heart	heart
2	chr12:4215400-4217400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:4215600-4216000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:4215600-4216200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:4215600-4216200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:4215600-4216200	Enhancers	Fetal Stomach	stomach
7	chr12:4215600-4216400	Enhancers	Fetal Thymus	thymus
8	chr12:4215600-4216600	Enhancers	GM12878-XiMat	blood
9	chr12:4215600-4217000	Enhancers	Primary T cells from cord blood	blood
10	chr12:4215600-4217000	Enhancers	Primary hematopoietic stem cells	blood
11	chr12:4215600-4217200	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links