Variant report

Variant	rs73257592
Chromosome Location	chr12:4197901-4197902
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11829820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11831112	0.90[AFR][1000 genomes]
rs11831812	1.00[ASN][1000 genomes]
rs11832475	1.00[AMR][1000 genomes]
rs11834077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11834174	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11836558	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11837775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11838249	1.00[ASN][1000 genomes]
rs1558614	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1558615	1.00[ASN][1000 genomes]
rs16931100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16931124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16931128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16931131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931139	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16931141	1.00[ASN][1000 genomes]
rs2429453	1.00[ASN][1000 genomes]
rs2532531	0.87[ASN][1000 genomes]
rs2532532	1.00[ASN][1000 genomes]
rs2532533	1.00[ASN][1000 genomes]
rs2532535	1.00[ASN][1000 genomes]
rs2532575	1.00[ASN][1000 genomes]
rs2532576	1.00[ASN][1000 genomes]
rs2540143	1.00[ASN][1000 genomes]
rs2540144	1.00[ASN][1000 genomes]
rs2540145	1.00[ASN][1000 genomes]
rs2540146	1.00[ASN][1000 genomes]
rs2540147	1.00[ASN][1000 genomes]
rs2540150	1.00[ASN][1000 genomes]
rs2724206	0.82[ASN][1000 genomes]
rs2724231	1.00[ASN][1000 genomes]
rs2724232	1.00[ASN][1000 genomes]
rs2724233	1.00[ASN][1000 genomes]
rs36097138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4525313	1.00[ASN][1000 genomes]
rs55772551	1.00[ASN][1000 genomes]
rs55787213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55825747	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55891544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56773631	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56891486	1.00[AMR][1000 genomes]
rs57196809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58592888	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58736101	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58775468	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58927319	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59549730	1.00[AMR][1000 genomes]
rs59746697	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59810408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59914894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59973578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60036022	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60989334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257583	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257588	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73257601	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259527	1.00[ASN][1000 genomes]
rs73259530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259533	1.00[AMR][1000 genomes]
rs73259538	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73259546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259581	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259591	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73259596	1.00[ASN][1000 genomes]
rs74058994	1.00[ASN][1000 genomes]
rs74061519	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74061522	0.83[AMR][1000 genomes]
rs74061528	1.00[ASN][1000 genomes]
rs7973836	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4189800-4201000	Weak transcription	Pancreas	Pancrea
2	chr12:4193000-4201200	Weak transcription	Lung	lung
3	chr12:4194200-4198000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:4194800-4200000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:4195000-4198000	Weak transcription	Fetal Lung	lung
6	chr12:4196800-4201200	Enhancers	Fetal Stomach	stomach
7	chr12:4197000-4198600	Enhancers	Adipose Nuclei	Adipose
8	chr12:4197000-4199200	Enhancers	Fetal Muscle Leg	muscle
9	chr12:4197600-4198000	Enhancers	Placenta	Placenta
10	chr12:4197800-4198000	Flanking Active TSS	Fetal Kidney	kidney

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