Variant report

Variant	rs74061522
Chromosome Location	chr12:4219281-4219282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PARP11-5	chr12:4219194-4219446	NONHSAT025942

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11829820	0.83[AMR][1000 genomes]
rs11832475	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11834077	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11834174	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11836558	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11837775	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16931100	0.83[AMR][1000 genomes]
rs16931124	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16931128	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16931131	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs36097138	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55787213	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55825747	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs55891544	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56773631	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56891486	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57196809	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57485269	0.85[AFR][1000 genomes]
rs58564884	0.85[AFR][1000 genomes]
rs58592888	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58736101	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58775468	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58927319	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59549730	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59746697	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59810408	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59914894	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59973578	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60036022	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60989334	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73257568	0.83[AMR][1000 genomes]
rs73257583	0.83[AMR][1000 genomes]
rs73257592	0.83[AMR][1000 genomes]
rs73257597	0.83[AMR][1000 genomes]
rs73257599	0.83[AMR][1000 genomes]
rs73257601	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259530	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259531	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259533	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259538	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259545	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259546	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259548	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259551	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259553	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259574	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259577	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259578	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259581	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259582	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73259591	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73261546	0.83[AFR][1000 genomes]
rs74061519	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4216000-4224000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:4216600-4224000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:4216800-4225000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:4217000-4219600	Enhancers	GM12878-XiMat	blood
5	chr12:4217000-4220000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:4217000-4220400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:4217000-4221400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:4217000-4222200	Weak transcription	Fetal Thymus	thymus
9	chr12:4217000-4223800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:4217000-4224000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr12:4217200-4220600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr12:4217600-4219400	Enhancers	HMEC	breast
13	chr12:4217600-4219400	Enhancers	NHEK	skin
14	chr12:4218200-4219600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:4218600-4220200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:4219000-4220200	Weak transcription	HSMM	muscle
17	chr12:4219200-4219800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr12:4219200-4221400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:4219200-4221400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:4219200-4222200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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