Variant report

Variant	rs73275520
Chromosome Location	chr14:69468883-69468884
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69444740..69447342-chr14:69466508..69469166,2	MCF-7	breast:
2	chr14:69404692..69406391-chr14:69468791..69470655,2	MCF-7	breast:
3	chr14:69467533..69469594-chr14:69550393..69552619,2	MCF-7	breast:
4	chr14:69408300..69408841-chr14:69468584..69469490,2	MCF-7	breast:
5	chr14:69378072..69379069-chr14:69468252..69469098,2	MCF-7	breast:
6	chr14:69468155..69470465-chr14:69471186..69473810,2	MCF-7	breast:
7	chr14:69378078..69379026-chr14:69468490..69469456,6	MCF-7	breast:
8	chr14:69461821..69465075-chr14:69467133..69470155,3	MCF-7	breast:
9	chr14:69404362..69404958-chr14:69468830..69469409,2	MCF-7	breast:
10	chr14:69404215..69405144-chr14:69468586..69469525,4	MCF-7	breast:
11	chr14:69463481..69466834-chr14:69468000..69470132,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17106764	1.00[AMR][1000 genomes]
rs17106793	1.00[AMR][1000 genomes]
rs56922727	1.00[AMR][1000 genomes]
rs57103818	1.00[AMR][1000 genomes]
rs58395904	1.00[AMR][1000 genomes]
rs59157439	1.00[AMR][1000 genomes]
rs59871527	1.00[AMR][1000 genomes]
rs60643493	1.00[AMR][1000 genomes]
rs60660183	1.00[AMR][1000 genomes]
rs7142735	1.00[AMR][1000 genomes]
rs73275510	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275568	1.00[AMR][1000 genomes]
rs73275583	1.00[AMR][1000 genomes]
rs73275592	1.00[AMR][1000 genomes]
rs73275597	1.00[AMR][1000 genomes]
rs73275598	1.00[AMR][1000 genomes]
rs73275599	1.00[AMR][1000 genomes]
rs73275602	1.00[AMR][1000 genomes]
rs73277010	1.00[AMR][1000 genomes]
rs73277013	1.00[AMR][1000 genomes]
rs73277015	1.00[AMR][1000 genomes]
rs73277016	1.00[AMR][1000 genomes]
rs73277032	1.00[AMR][1000 genomes]
rs73278952	1.00[AMR][1000 genomes]
rs73278958	1.00[AMR][1000 genomes]
rs73278965	1.00[AMR][1000 genomes]
rs73278972	1.00[AMR][1000 genomes]
rs73278980	1.00[AMR][1000 genomes]
rs73278990	1.00[AMR][1000 genomes]
rs73278996	1.00[AMR][1000 genomes]
rs73280821	1.00[AMR][1000 genomes]
rs73280853	1.00[AMR][1000 genomes]
rs73280860	1.00[AMR][1000 genomes]
rs73280900	1.00[AMR][1000 genomes]
rs73282607	1.00[AMR][1000 genomes]
rs73282617	1.00[AMR][1000 genomes]
rs8016668	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69456000-69471200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69462800-69470800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:69465000-69471200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:69465000-69471600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:69467800-69470000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:69468000-69469000	Enhancers	Placenta	Placenta
8	chr14:69468800-69469000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69468800-69469000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:69468800-69469200	Enhancers	Stomach Mucosa	stomach
11	chr14:69468800-69469200	Enhancers	A549	lung
12	chr14:69468800-69469800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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