Variant report

Variant	rs73278972
Chromosome Location	chr14:69583263-69583264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69581199..69584196-chr14:69618676..69620631,2	K562	blood:
2	chr14:69582087..69584319-chr14:69626141..69628681,2	K562	blood:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17106764	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106793	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56922727	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57103818	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58395904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59157439	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59871527	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60643493	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660183	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7142735	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275510	1.00[AMR][1000 genomes]
rs73275520	1.00[AMR][1000 genomes]
rs73275568	1.00[AMR][1000 genomes]
rs73275583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275592	1.00[AMR][1000 genomes]
rs73275597	1.00[AMR][1000 genomes]
rs73275598	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275599	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275602	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277013	1.00[AMR][1000 genomes]
rs73277015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277016	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277032	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278952	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278980	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280821	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280860	1.00[AMR][1000 genomes]
rs73280900	1.00[AMR][1000 genomes]
rs73282607	1.00[AMR][1000 genomes]
rs73282617	1.00[AMR][1000 genomes]
rs8016668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
2	chr14:69559000-69583800	Weak transcription	Colonic Mucosa	Colon
3	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:69563400-69584600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:69564000-69584600	Weak transcription	Fetal Brain Male	brain
6	chr14:69565000-69584400	Weak transcription	Right Ventricle	heart
7	chr14:69565200-69583800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:69565200-69584000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:69566000-69583600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:69568600-69586000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:69568600-69596000	Weak transcription	K562	blood
13	chr14:69568800-69595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:69569600-69585600	Strong transcription	Liver	Liver
15	chr14:69569600-69589200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr14:69572000-69583800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:69573600-69585400	Strong transcription	Fetal Muscle Trunk	muscle
18	chr14:69573800-69584000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr14:69573800-69589200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr14:69574200-69584600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:69574200-69589200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:69574600-69583800	Weak transcription	Stomach Mucosa	stomach
23	chr14:69574600-69589200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:69574800-69583800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr14:69574800-69588600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:69575000-69588400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:69575200-69589200	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr14:69576200-69588600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:69576800-69586600	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr14:69577200-69589000	Strong transcription	Fetal Muscle Leg	muscle
31	chr14:69577400-69583600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr14:69577400-69588600	Strong transcription	Fetal Intestine Large	intestine
33	chr14:69577600-69584000	Strong transcription	Primary B cells from cord blood	blood
34	chr14:69577600-69586400	Strong transcription	GM12878-XiMat	blood
35	chr14:69578000-69588400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr14:69578200-69585600	Strong transcription	Adipose Nuclei	Adipose
37	chr14:69578200-69585600	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr14:69578600-69588400	Weak transcription	Ovary	ovary
39	chr14:69578800-69585000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:69579200-69586400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:69579200-69588800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:69579200-69589000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:69579600-69586600	Strong transcription	HSMM	muscle
44	chr14:69579600-69588600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr14:69580200-69585200	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:69580200-69588200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:69580200-69588600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:69580400-69585600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr14:69580400-69585600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr14:69580600-69585200	Strong transcription	Colon Smooth Muscle	Colon

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