Variant report

Variant	rs73275592
Chromosome Location	chr14:69506916-69506917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69502361..69504492-chr14:69504635..69507504,3	MCF-7	breast:
2	chr14:69504745..69507053-chr14:69509221..69511186,2	K562	blood:
3	chr14:69504422..69507358-chr14:69508879..69511159,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17106764	1.00[AMR][1000 genomes]
rs17106793	1.00[AMR][1000 genomes]
rs56922727	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57103818	1.00[AMR][1000 genomes]
rs58395904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59157439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59871527	1.00[AMR][1000 genomes]
rs60643493	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660183	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7142735	1.00[AMR][1000 genomes]
rs73275510	1.00[AMR][1000 genomes]
rs73275520	1.00[AMR][1000 genomes]
rs73275568	1.00[AMR][1000 genomes]
rs73275583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275598	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275602	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277010	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277013	1.00[AMR][1000 genomes]
rs73277015	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277016	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278952	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278958	1.00[AMR][1000 genomes]
rs73278965	1.00[AMR][1000 genomes]
rs73278972	1.00[AMR][1000 genomes]
rs73278980	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278990	1.00[AMR][1000 genomes]
rs73278996	1.00[AMR][1000 genomes]
rs73280821	1.00[AMR][1000 genomes]
rs73280853	1.00[AMR][1000 genomes]
rs73280860	1.00[AMR][1000 genomes]
rs73280900	1.00[AMR][1000 genomes]
rs73282607	1.00[AMR][1000 genomes]
rs73282617	1.00[AMR][1000 genomes]
rs8016668	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69502200-69508600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:69502600-69508000	Weak transcription	Fetal Kidney	kidney
3	chr14:69503600-69507200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:69503600-69507200	Enhancers	NH-A	brain
5	chr14:69503800-69507200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:69504000-69508400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:69504800-69508400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:69504800-69508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69504800-69509600	Weak transcription	Pancreas	Pancrea
10	chr14:69505000-69508600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:69505200-69509600	Weak transcription	Spleen	Spleen
12	chr14:69505400-69510000	Weak transcription	Fetal Heart	heart
13	chr14:69505400-69510200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:69505800-69508800	Weak transcription	Ovary	ovary
15	chr14:69505800-69509200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:69505800-69509200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:69505800-69509600	Weak transcription	Esophagus	oesophagus
18	chr14:69505800-69509600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:69505800-69509800	Weak transcription	Placenta	Placenta
20	chr14:69505800-69509800	Weak transcription	Left Ventricle	heart
21	chr14:69505800-69509800	Weak transcription	Right Atrium	heart
22	chr14:69505800-69510600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:69505800-69510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:69506000-69507000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:69506000-69507200	Enhancers	HUVEC	blood vessel
26	chr14:69506000-69508600	Weak transcription	Brain Angular Gyrus	brain
27	chr14:69506000-69508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:69506000-69508800	Weak transcription	Brain Anterior Caudate	brain
29	chr14:69506000-69509400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr14:69506000-69509400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr14:69506000-69511200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:69506200-69507000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr14:69506200-69508600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:69506200-69508600	Weak transcription	Adipose Nuclei	Adipose
35	chr14:69506200-69509600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr14:69506200-69510000	Weak transcription	Right Ventricle	heart
37	chr14:69506400-69507000	Weak transcription	Aorta	Aorta
38	chr14:69506400-69508400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:69506400-69508800	Weak transcription	NHDF-Ad	bronchial
40	chr14:69506400-69509200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:69506400-69509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr14:69506400-69509600	Weak transcription	Psoas Muscle	Psoas
43	chr14:69506400-69509800	Weak transcription	NHLF	lung
44	chr14:69506400-69510200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:69506400-69510400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:69506600-69507200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:69506600-69508000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr14:69506600-69508000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:69506600-69508600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:69506600-69508600	Weak transcription	HSMMtube	muscle

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