Variant report

Variant	rs73277032
Chromosome Location	chr14:69554992-69554993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69259377..69262171-chr14:69554524..69556550,2	MCF-7	breast:
2	chr14:69550303..69552561-chr14:69553940..69555928,2	K562	blood:
3	chr14:69547127..69549589-chr14:69553364..69555447,2	K562	blood:
4	chr14:69444534..69446893-chr14:69551925..69555091,4	MCF-7	breast:
5	chr14:69545451..69547104-chr14:69553790..69555545,2	K562	blood:
6	chr14:69410467..69412798-chr14:69554538..69557581,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17106764	1.00[AMR][1000 genomes]
rs17106793	1.00[AMR][1000 genomes]
rs56922727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57103818	1.00[AMR][1000 genomes]
rs58395904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59157439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59871527	1.00[AMR][1000 genomes]
rs60643493	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60660183	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7142735	1.00[AMR][1000 genomes]
rs73275510	1.00[AMR][1000 genomes]
rs73275520	1.00[AMR][1000 genomes]
rs73275568	1.00[AMR][1000 genomes]
rs73275583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275597	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275598	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275602	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277010	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277013	1.00[AMR][1000 genomes]
rs73277015	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277016	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278958	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278965	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278972	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278980	1.00[AMR][1000 genomes]
rs73278990	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278996	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280821	1.00[AMR][1000 genomes]
rs73280853	1.00[AMR][1000 genomes]
rs73280860	1.00[AMR][1000 genomes]
rs73280900	1.00[AMR][1000 genomes]
rs73282607	1.00[AMR][1000 genomes]
rs73282617	1.00[AMR][1000 genomes]
rs8016668	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
2	chr14:69522400-69556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:69523600-69556400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:69524000-69557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:69524800-69556600	Weak transcription	Fetal Brain Male	brain
7	chr14:69527000-69558200	Weak transcription	Esophagus	oesophagus
8	chr14:69528600-69560200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:69535600-69565200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr14:69536200-69556400	Weak transcription	K562	blood
11	chr14:69540400-69560600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:69541000-69556200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:69541000-69556400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:69541400-69559800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:69541600-69556400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
17	chr14:69543000-69559000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:69545800-69559000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr14:69546000-69563200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:69546200-69556400	Weak transcription	Gastric	stomach
21	chr14:69546200-69556400	Weak transcription	Right Ventricle	heart
22	chr14:69546200-69559000	Strong transcription	GM12878-XiMat	blood
23	chr14:69546200-69559200	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
25	chr14:69546400-69557600	Weak transcription	Pancreas	Pancrea
26	chr14:69546400-69558600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:69546600-69558800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr14:69546800-69558000	Weak transcription	Small Intestine	intestine
29	chr14:69547000-69555400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:69547200-69555600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:69547200-69557800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:69547200-69560400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:69547600-69559200	Strong transcription	Fetal Muscle Leg	muscle
34	chr14:69547600-69559400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:69547800-69558800	Strong transcription	Left Ventricle	heart
36	chr14:69548000-69558600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr14:69548000-69558800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr14:69548000-69560200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:69548000-69563000	Strong transcription	Fetal Thymus	thymus
40	chr14:69548000-69563600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:69548200-69555000	Strong transcription	Fetal Muscle Trunk	muscle
42	chr14:69548200-69559200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr14:69548200-69567400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr14:69548400-69559400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr14:69548600-69555200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:69548600-69556600	Weak transcription	NHDF-Ad	bronchial
47	chr14:69548600-69560200	Weak transcription	Fetal Heart	heart
48	chr14:69548800-69556600	Weak transcription	Brain Hippocampus Middle	brain
49	chr14:69548800-69559800	Weak transcription	A549	lung
50	chr14:69548800-69560200	Weak transcription	Stomach Mucosa	stomach

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