Variant report

Variant	rs73332872
Chromosome Location	chr10:52761779-52761780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12569858	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571742	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573170	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2816827	1.00[ASN][1000 genomes]
rs56866455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59329249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60142011	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73322628	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322629	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322636	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73322644	0.85[EUR][1000 genomes]
rs73322648	0.85[EUR][1000 genomes]
rs73322650	0.85[EUR][1000 genomes]
rs73332813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334845	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334849	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52753800-52765400	Weak transcription	Left Ventricle	heart
2	chr10:52756800-52765200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:52756800-52794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:52758000-52762400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:52758000-52771800	Weak transcription	Right Atrium	heart
6	chr10:52758600-52762400	Weak transcription	Psoas Muscle	Psoas
7	chr10:52761000-52761800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:52761200-52762400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:52761200-52763000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:52761200-52765400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:52761200-52765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:52761200-52765400	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:52761400-52761800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:52761400-52762400	Weak transcription	NHLF	lung
15	chr10:52761600-52762400	Weak transcription	Aorta	Aorta
16	chr10:52761600-52762400	Weak transcription	Fetal Kidney	kidney
17	chr10:52761600-52763200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:52761600-52765200	Weak transcription	NHDF-Ad	bronchial
19	chr10:52761600-52765400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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