Variant report

Variant	rs73334845
Chromosome Location	chr10:52768180-52768181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12569858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569866	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2816827	1.00[ASN][1000 genomes]
rs56866455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59329249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60142011	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73322628	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322629	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73322644	0.81[EUR][1000 genomes]
rs73322648	0.81[EUR][1000 genomes]
rs73322650	0.81[EUR][1000 genomes]
rs73332813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73332872	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334849	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52756800-52794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:52758000-52771800	Weak transcription	Right Atrium	heart
3	chr10:52766000-52770000	Weak transcription	Fetal Lung	lung
4	chr10:52766000-52773600	Weak transcription	NHLF	lung
5	chr10:52766000-52774000	Weak transcription	Left Ventricle	heart
6	chr10:52766000-52774000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:52767000-52768200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:52767200-52768200	Enhancers	HMEC	breast
9	chr10:52767200-52768200	Enhancers	NHEK	skin
10	chr10:52767200-52768400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:52767400-52768200	Enhancers	NHDF-Ad	bronchial
12	chr10:52767400-52768400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:52767600-52768200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:52767600-52768400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:52767600-52768400	Enhancers	HSMMtube	muscle
16	chr10:52767800-52768200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:52767800-52768400	Enhancers	Psoas Muscle	Psoas
18	chr10:52767800-52771000	Weak transcription	Aorta	Aorta
19	chr10:52768000-52768200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:52768000-52782800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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