Variant report

Variant	rs73322644
Chromosome Location	chr10:52796529-52796530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12569858	0.81[EUR][1000 genomes]
rs12569866	0.85[EUR][1000 genomes]
rs12571742	0.81[EUR][1000 genomes]
rs56866455	0.81[EUR][1000 genomes]
rs60142011	0.81[EUR][1000 genomes]
rs73322628	0.81[EUR][1000 genomes]
rs73322629	0.81[EUR][1000 genomes]
rs73322636	0.81[EUR][1000 genomes]
rs73322648	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73322650	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73322654	0.88[EUR][1000 genomes]
rs73332813	0.81[EUR][1000 genomes]
rs73332872	0.85[EUR][1000 genomes]
rs73334845	0.81[EUR][1000 genomes]
rs73334849	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52794200-52796600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr10:52795400-52801200	Weak transcription	Aorta	Aorta
3	chr10:52796000-52796600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:52796200-52796600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:52796400-52796600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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