Variant report

Variant	rs12569866
Chromosome Location	chr10:52753173-52753174
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12569858	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571742	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573170	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573726	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17513956	1.00[AFR][1000 genomes]
rs2816827	1.00[ASN][1000 genomes]
rs56866455	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59329249	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60142011	0.95[EUR][1000 genomes]
rs73322628	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322629	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322636	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73322644	0.85[EUR][1000 genomes]
rs73322648	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73322650	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73322654	1.00[AMR][1000 genomes]
rs73332813	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73332872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334845	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334849	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52748600-52753800	Active TSS	Right Atrium	heart
2	chr10:52748600-52754400	Active TSS	Aorta	Aorta
3	chr10:52750000-52753200	Active TSS	Left Ventricle	heart
4	chr10:52750000-52753600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr10:52750000-52753600	Active TSS	Psoas Muscle	Psoas
6	chr10:52750000-52754600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr10:52750200-52753600	Active TSS	Lung	lung
8	chr10:52750200-52754000	Active TSS	Right Ventricle	heart
9	chr10:52750600-52753600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:52750600-52754200	Active TSS	Fetal Lung	lung
11	chr10:52751600-52753800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
12	chr10:52751600-52754200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr10:52751800-52753400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
14	chr10:52751800-52753400	Flanking Active TSS	Ovary	ovary
15	chr10:52751800-52753800	Flanking Active TSS	HSMMtube	muscle
16	chr10:52752000-52753200	Flanking Active TSS	NHDF-Ad	bronchial
17	chr10:52752000-52753600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:52752000-52753800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:52752200-52753400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr10:52752200-52753800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr10:52752400-52753200	Enhancers	Fetal Heart	heart
22	chr10:52752400-52753400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:52752400-52753400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:52752400-52753400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr10:52752400-52753600	Bivalent/Poised TSS	Placenta	Placenta
26	chr10:52752400-52753800	Enhancers	Stomach Mucosa	stomach
27	chr10:52752400-52753800	Flanking Active TSS	HSMM	muscle
28	chr10:52752400-52754000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr10:52752600-52753200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
30	chr10:52752600-52753200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:52752600-52753400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr10:52752600-52753400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:52752600-52753400	Flanking Active TSS	Colonic Mucosa	Colon
34	chr10:52752600-52753400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
35	chr10:52752600-52753600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:52752600-52753600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:52752600-52753600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr10:52752600-52753600	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr10:52752600-52753800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr10:52752600-52753800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
41	chr10:52752600-52754000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:52752600-52754000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:52752800-52753200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:52752800-52753200	Flanking Active TSS	Colon Smooth Muscle	Colon
45	chr10:52752800-52753200	Flanking Active TSS	Fetal Kidney	kidney
46	chr10:52752800-52753200	Flanking Active TSS	NHLF	lung
47	chr10:52752800-52753200	Flanking Bivalent TSS/Enh	Osteobl	bone
48	chr10:52752800-52753400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:52752800-52753600	Flanking Active TSS	Pancreas	Pancrea
50	chr10:52752800-52753600	Bivalent Enhancer	Small Intestine	intestine

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