Variant report

Variant	rs73343082
Chromosome Location	chr5:127045929-127045930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs57616954	0.91[AFR][1000 genomes]
rs58917387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341115	1.00[AMR][1000 genomes]
rs73341125	1.00[AMR][1000 genomes]
rs73341129	1.00[AMR][1000 genomes]
rs73341158	1.00[AMR][1000 genomes]
rs73341175	1.00[AMR][1000 genomes]
rs73343008	1.00[AMR][1000 genomes]
rs73343013	1.00[AMR][1000 genomes]
rs73343015	1.00[AMR][1000 genomes]
rs73343026	1.00[AMR][1000 genomes]
rs73343041	1.00[AMR][1000 genomes]
rs73343045	1.00[AMR][1000 genomes]
rs73343046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343055	1.00[AFR][1000 genomes]
rs73343056	1.00[AMR][1000 genomes]
rs73343067	1.00[AMR][1000 genomes]
rs73343085	1.00[AMR][1000 genomes]
rs73343088	1.00[AMR][1000 genomes]
rs73343094	1.00[AMR][1000 genomes]
rs73343101	1.00[AMR][1000 genomes]
rs73345005	1.00[AMR][1000 genomes]
rs73345022	0.91[AFR][1000 genomes]
rs73345031	0.91[AFR][1000 genomes]
rs73345034	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345043	0.91[AFR][1000 genomes]
rs73345059	0.91[AFR][1000 genomes]
rs73345077	0.91[AFR][1000 genomes]
rs73345090	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1798341	chr5:127038316-127061310	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127044200-127053400	Weak transcription	Ovary	ovary
2	chr5:127045000-127047600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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