Variant report

Variant	rs73345090
Chromosome Location	chr5:127145429-127145430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127140096..127141599-chr5:127143950..127145485,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57616954	1.00[AFR][1000 genomes]
rs58917387	1.00[AFR][1000 genomes]
rs73343046	0.91[AFR][1000 genomes]
rs73343055	0.91[AFR][1000 genomes]
rs73343082	0.91[AFR][1000 genomes]
rs73345022	1.00[AFR][1000 genomes]
rs73345031	1.00[AFR][1000 genomes]
rs73345034	1.00[AFR][1000 genomes]
rs73345039	1.00[AFR][1000 genomes]
rs73345043	1.00[AFR][1000 genomes]
rs73345059	1.00[AFR][1000 genomes]
rs73345077	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127138600-127146400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:127139000-127145600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:127139200-127151800	Weak transcription	Stomach Mucosa	stomach
4	chr5:127141000-127147400	Weak transcription	NHDF-Ad	bronchial
5	chr5:127141000-127148000	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:127141200-127147400	Weak transcription	NHLF	lung
7	chr5:127141400-127145800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:127141800-127147600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:127143800-127147200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:127144200-127146800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:127144400-127146000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:127144400-127146600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:127144800-127146400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:127145000-127146800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:127145000-127151000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:127145200-127146200	Enhancers	Brain Angular Gyrus	brain
17	chr5:127145200-127146400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:127145200-127146400	Enhancers	Brain Substantia Nigra	brain
19	chr5:127145200-127146600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr5:127145200-127146800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:127145200-127147000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:127145400-127145800	Enhancers	Fetal Brain Male	brain
23	chr5:127145400-127146000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:127145400-127146200	Enhancers	Brain Hippocampus Middle	brain
25	chr5:127145400-127147200	Enhancers	HUES6 Cell Line	embryonic stem cell

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