Variant report

Variant	rs73345034
Chromosome Location	chr5:127105408-127105409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs57616954	1.00[AFR][1000 genomes]
rs58917387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341115	1.00[AMR][1000 genomes]
rs73341125	1.00[AMR][1000 genomes]
rs73341129	1.00[AMR][1000 genomes]
rs73341158	1.00[AMR][1000 genomes]
rs73341175	1.00[AMR][1000 genomes]
rs73343008	1.00[AMR][1000 genomes]
rs73343013	1.00[AMR][1000 genomes]
rs73343015	1.00[AMR][1000 genomes]
rs73343026	1.00[AMR][1000 genomes]
rs73343041	1.00[AMR][1000 genomes]
rs73343045	1.00[AMR][1000 genomes]
rs73343046	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343055	0.91[AFR][1000 genomes]
rs73343056	1.00[AMR][1000 genomes]
rs73343067	1.00[AMR][1000 genomes]
rs73343082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343085	1.00[AMR][1000 genomes]
rs73343088	1.00[AMR][1000 genomes]
rs73343094	1.00[AMR][1000 genomes]
rs73343101	1.00[AMR][1000 genomes]
rs73345005	1.00[AMR][1000 genomes]
rs73345022	1.00[AFR][1000 genomes]
rs73345031	1.00[AFR][1000 genomes]
rs73345039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345043	1.00[AFR][1000 genomes]
rs73345059	1.00[AFR][1000 genomes]
rs73345077	1.00[AFR][1000 genomes]
rs73345090	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127099000-127107600	Weak transcription	Left Ventricle	heart
2	chr5:127099200-127106000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:127102600-127106200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:127103000-127108000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:127103000-127109000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:127104000-127106400	Enhancers	Fetal Brain Male	brain
7	chr5:127104000-127107400	Enhancers	Fetal Heart	heart
8	chr5:127104600-127105600	Weak transcription	Brain Germinal Matrix	brain
9	chr5:127105000-127106000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:127105200-127106200	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links