Variant report

Variant	rs73345059
Chromosome Location	chr5:127120926-127120927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57616954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58917387	1.00[AFR][1000 genomes]
rs73343046	0.91[AFR][1000 genomes]
rs73343055	0.91[AFR][1000 genomes]
rs73343082	0.91[AFR][1000 genomes]
rs73345022	1.00[AFR][1000 genomes]
rs73345031	1.00[AFR][1000 genomes]
rs73345034	1.00[AFR][1000 genomes]
rs73345039	1.00[AFR][1000 genomes]
rs73345043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345090	1.00[AFR][1000 genomes]
rs73345095	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127120000-127121200	Enhancers	Fetal Muscle Leg	muscle
2	chr5:127120000-127121600	Enhancers	Fetal Heart	heart
3	chr5:127120000-127123000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:127120600-127121400	Enhancers	Duodenum Mucosa	Duodenum
5	chr5:127120600-127122200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:127120600-127122600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:127120800-127121000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:127120800-127121000	Bivalent Enhancer	HSMM	muscle
9	chr5:127120800-127121000	Flanking Active TSS	HSMMtube	muscle
10	chr5:127120800-127121400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:127120800-127121400	Enhancers	Left Ventricle	heart
12	chr5:127120800-127121400	Enhancers	Stomach Mucosa	stomach
13	chr5:127120800-127122000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:127120800-127122000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:127120800-127122000	Enhancers	NHLF	lung
16	chr5:127120800-127122800	Bivalent Enhancer	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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