Variant report

Variant	rs73345077
Chromosome Location	chr5:127136865-127136866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57616954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58917387	1.00[AFR][1000 genomes]
rs73343046	0.91[AFR][1000 genomes]
rs73343055	0.91[AFR][1000 genomes]
rs73343082	0.91[AFR][1000 genomes]
rs73345022	1.00[AFR][1000 genomes]
rs73345031	1.00[AFR][1000 genomes]
rs73345034	1.00[AFR][1000 genomes]
rs73345039	1.00[AFR][1000 genomes]
rs73345043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345090	1.00[AFR][1000 genomes]
rs73345095	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127128200-127137400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:127135000-127137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:127135200-127143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:127135400-127138200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:127135600-127137400	Weak transcription	NHEK	skin
6	chr5:127135600-127137600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:127136000-127137000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:127136000-127137200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:127136000-127137400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:127136600-127137400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:127136600-127138200	Enhancers	Gastric	stomach
12	chr5:127136600-127138800	Enhancers	NHLF	lung
13	chr5:127136600-127139200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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