Variant report

Variant	rs73384011
Chromosome Location	chr15:34498576-34498577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34495127..34499100-chr15:34500646..34503502,4	MCF-7	breast:
2	chr15:34498121..34503791-chr15:34514506..34519551,14	K562	blood:
3	chr15:34493054..34495397-chr15:34496160..34499059,3	MCF-7	breast:
4	chr15:34497680..34504001-chr15:34514973..34521212,14	K562	blood:

Variant related genes	Relation type
ENSG00000128463	Chromatin interaction
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10152261	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852315	0.88[ASN][1000 genomes]
rs11853345	0.88[ASN][1000 genomes]
rs11853347	0.88[ASN][1000 genomes]
rs11854298	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856753	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857604	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857608	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11858527	0.88[ASN][1000 genomes]
rs17236749	0.88[ASN][1000 genomes]
rs17554484	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817770	0.88[ASN][1000 genomes]
rs2118159	0.88[ASN][1000 genomes]
rs2118160	0.88[ASN][1000 genomes]
rs28406544	0.88[ASN][1000 genomes]
rs3764236	0.88[ASN][1000 genomes]
rs3829483	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41405647	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486849	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581678	0.88[ASN][1000 genomes]
rs55801303	0.88[ASN][1000 genomes]
rs6495624	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161944	0.88[ASN][1000 genomes]
rs7168139	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7176526	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7179249	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7183568	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73382081	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73382086	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7497666	0.83[ASN][1000 genomes]
rs8037674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672345	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672434	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672496	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672544	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9672784	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806468	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
2	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix
4	chr15:34466400-34500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:34467000-34500800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:34467200-34500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:34471000-34501000	Weak transcription	Aorta	Aorta
8	chr15:34471600-34500400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:34473400-34500400	Weak transcription	HSMMtube	muscle
10	chr15:34475000-34500400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:34475600-34499800	Weak transcription	Ovary	ovary
12	chr15:34475600-34500000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:34475600-34500400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:34475600-34500400	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:34475600-34500400	Weak transcription	HUVEC	blood vessel
16	chr15:34476200-34499600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:34476200-34500000	Weak transcription	Fetal Brain Female	brain
18	chr15:34476400-34500800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:34476800-34499800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:34477000-34499800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:34477200-34500000	Weak transcription	Liver	Liver
22	chr15:34477600-34501000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:34477600-34501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:34478000-34500200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:34478800-34500000	Weak transcription	Fetal Intestine Large	intestine
26	chr15:34478800-34500400	Weak transcription	Thymus	Thymus
27	chr15:34478800-34500800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:34479200-34500000	Weak transcription	Esophagus	oesophagus
29	chr15:34479200-34500800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:34479200-34501000	Weak transcription	Gastric	stomach
31	chr15:34479400-34500800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:34479400-34501000	Weak transcription	Left Ventricle	heart
33	chr15:34479400-34501600	Weak transcription	Lung	lung
34	chr15:34479600-34500800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:34479600-34501800	Weak transcription	Spleen	Spleen
36	chr15:34480000-34500000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:34480000-34500800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:34480400-34500400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:34480600-34498600	Weak transcription	Fetal Intestine Small	intestine
40	chr15:34481000-34500400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:34481000-34500800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:34482800-34500800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:34483000-34500400	Weak transcription	GM12878-XiMat	blood
44	chr15:34483000-34500600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:34483200-34500000	Weak transcription	NHDF-Ad	bronchial
46	chr15:34483200-34501000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:34485400-34500400	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:34485600-34500800	Weak transcription	Brain Substantia Nigra	brain
49	chr15:34486200-34498800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:34486400-34501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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