Variant report

Variant	rs73412035
Chromosome Location	chr6:33328434-33328435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33283911..33285602-chr6:33327054..33329692,2	K562	blood:
2	chr6:33238564..33240970-chr6:33325772..33328532,3	MCF-7	breast:
3	chr6:33239559..33241561-chr6:33327024..33329946,2	K562	blood:
4	chr6:33328288..33333241-chr6:33333249..33338819,6	K562	blood:
5	chr6:33238627..33241561-chr6:33327024..33329946,3	K562	blood:
6	chr6:33280542..33282633-chr6:33328249..33329859,2	MCF-7	breast:
7	chr6:33278819..33285671-chr6:33324194..33330069,12	MCF-7	breast:
8	chr6:33324046..33327931-chr6:33328359..33332196,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223501	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000228285	Chromatin interaction
ENSG00000236104	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10214667	1.00[EUR][1000 genomes]
rs11967163	1.00[EUR][1000 genomes]
rs11970477	1.00[EUR][1000 genomes]
rs28488940	1.00[EUR][1000 genomes]
rs28589816	1.00[EUR][1000 genomes]
rs28868935	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55897728	1.00[EUR][1000 genomes]
rs56085633	1.00[EUR][1000 genomes]
rs56122765	1.00[EUR][1000 genomes]
rs56124649	1.00[EUR][1000 genomes]
rs56148814	1.00[EUR][1000 genomes]
rs56226140	1.00[EUR][1000 genomes]
rs56250036	1.00[EUR][1000 genomes]
rs56875788	1.00[EUR][1000 genomes]
rs57104544	1.00[EUR][1000 genomes]
rs57226870	1.00[AMR][1000 genomes]
rs57290518	1.00[EUR][1000 genomes]
rs57877240	1.00[EUR][1000 genomes]
rs58043092	1.00[EUR][1000 genomes]
rs58058146	1.00[EUR][1000 genomes]
rs58312523	1.00[EUR][1000 genomes]
rs58566767	1.00[EUR][1000 genomes]
rs59401679	1.00[EUR][1000 genomes]
rs60289279	1.00[EUR][1000 genomes]
rs60854312	1.00[EUR][1000 genomes]
rs60880341	1.00[EUR][1000 genomes]
rs61138871	1.00[EUR][1000 genomes]
rs61163286	1.00[EUR][1000 genomes]
rs61348385	1.00[EUR][1000 genomes]
rs61589902	1.00[EUR][1000 genomes]
rs6935532	1.00[AMR][1000 genomes]
rs73402380	1.00[EUR][1000 genomes]
rs73402381	1.00[EUR][1000 genomes]
rs73402386	1.00[EUR][1000 genomes]
rs73412024	1.00[AMR][1000 genomes]
rs73412040	1.00[EUR][1000 genomes]
rs73741826	1.00[EUR][1000 genomes]
rs73741830	1.00[EUR][1000 genomes]
rs73741832	1.00[EUR][1000 genomes]
rs73741833	1.00[EUR][1000 genomes]
rs73741836	1.00[EUR][1000 genomes]
rs73741932	1.00[EUR][1000 genomes]
rs7742848	1.00[EUR][1000 genomes]
rs9461859	1.00[EUR][1000 genomes]
rs9461861	1.00[EUR][1000 genomes]
rs9461865	1.00[EUR][1000 genomes]
rs9461866	1.00[EUR][1000 genomes]
rs9461871	1.00[EUR][1000 genomes]
rs9461872	1.00[EUR][1000 genomes]
rs9469407	1.00[AMR][1000 genomes]
rs9469408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469409	1.00[EUR][1000 genomes]
rs9469410	1.00[EUR][1000 genomes]
rs9469415	1.00[EUR][1000 genomes]
rs9469416	1.00[EUR][1000 genomes]
rs9469419	1.00[EUR][1000 genomes]
rs9469421	1.00[EUR][1000 genomes]
rs9469433	1.00[EUR][1000 genomes]
rs9469437	1.00[EUR][1000 genomes]
rs9469441	1.00[EUR][1000 genomes]
rs9469442	1.00[EUR][1000 genomes]
rs9469444	1.00[EUR][1000 genomes]
rs9469445	1.00[EUR][1000 genomes]
rs9469446	1.00[EUR][1000 genomes]
rs9469468	1.00[EUR][1000 genomes]
rs9469473	1.00[EUR][1000 genomes]
rs9469474	1.00[EUR][1000 genomes]
rs9469476	1.00[EUR][1000 genomes]
rs9469477	1.00[EUR][1000 genomes]
rs9469478	1.00[EUR][1000 genomes]
rs9469479	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33322000-33332200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:33324400-33332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:33324600-33340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33326200-33329600	Weak transcription	Stomach Mucosa	stomach
5	chr6:33327600-33332000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:33327800-33328600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:33327800-33329200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:33327800-33332000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:33328000-33329400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:33328000-33330600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:33328200-33328800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:33328200-33332200	Weak transcription	A549	lung
13	chr6:33328400-33330600	Weak transcription	K562	blood

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