Variant report

Variant	rs9469415
Chromosome Location	chr6:33350915-33350916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33238834..33242273-chr6:33348728..33351900,3	K562	blood:
2	chr6:33350341..33351862-chr6:33353859..33356197,2	K562	blood:
3	chr6:33350087..33352952-chr6:33384695..33386243,2	K562	blood:
4	chr6:33254790..33256501-chr6:33349050..33351676,2	K562	blood:
5	chr6:33287030..33291405-chr6:33349040..33354148,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204209	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000227057	Chromatin interaction
ENSG00000231500	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10214667	1.00[EUR][1000 genomes]
rs11967163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967604	1.00[AMR][1000 genomes]
rs11970477	1.00[EUR][1000 genomes]
rs28488940	1.00[EUR][1000 genomes]
rs28589816	1.00[EUR][1000 genomes]
rs28868935	1.00[EUR][1000 genomes]
rs55897728	1.00[EUR][1000 genomes]
rs56085633	1.00[EUR][1000 genomes]
rs56122765	1.00[EUR][1000 genomes]
rs56124649	1.00[EUR][1000 genomes]
rs56148814	1.00[EUR][1000 genomes]
rs56226140	1.00[EUR][1000 genomes]
rs56250036	1.00[EUR][1000 genomes]
rs56875788	1.00[EUR][1000 genomes]
rs57104544	1.00[EUR][1000 genomes]
rs57290518	1.00[EUR][1000 genomes]
rs57877240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58043092	1.00[EUR][1000 genomes]
rs58058146	1.00[EUR][1000 genomes]
rs58312523	1.00[EUR][1000 genomes]
rs58566767	1.00[EUR][1000 genomes]
rs59401679	1.00[EUR][1000 genomes]
rs60289279	1.00[EUR][1000 genomes]
rs60854312	1.00[EUR][1000 genomes]
rs60880341	1.00[EUR][1000 genomes]
rs61138871	1.00[EUR][1000 genomes]
rs61163286	1.00[EUR][1000 genomes]
rs61348385	1.00[EUR][1000 genomes]
rs61589902	1.00[EUR][1000 genomes]
rs73402380	1.00[EUR][1000 genomes]
rs73402381	1.00[EUR][1000 genomes]
rs73402386	1.00[EUR][1000 genomes]
rs73412035	1.00[EUR][1000 genomes]
rs73412040	1.00[EUR][1000 genomes]
rs73741826	1.00[EUR][1000 genomes]
rs73741830	1.00[EUR][1000 genomes]
rs73741832	1.00[EUR][1000 genomes]
rs73741833	1.00[EUR][1000 genomes]
rs73741836	1.00[EUR][1000 genomes]
rs73741932	1.00[EUR][1000 genomes]
rs73743206	1.00[EUR][1000 genomes]
rs73743207	1.00[EUR][1000 genomes]
rs7742848	1.00[EUR][1000 genomes]
rs9461859	1.00[EUR][1000 genomes]
rs9461861	1.00[EUR][1000 genomes]
rs9461865	1.00[EUR][1000 genomes]
rs9461866	1.00[EUR][1000 genomes]
rs9461871	1.00[EUR][1000 genomes]
rs9461872	1.00[EUR][1000 genomes]
rs9469408	1.00[EUR][1000 genomes]
rs9469409	1.00[EUR][1000 genomes]
rs9469410	1.00[EUR][1000 genomes]
rs9469416	1.00[EUR][1000 genomes]
rs9469419	1.00[EUR][1000 genomes]
rs9469421	1.00[EUR][1000 genomes]
rs9469433	1.00[EUR][1000 genomes]
rs9469437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469442	1.00[EUR][1000 genomes]
rs9469444	1.00[EUR][1000 genomes]
rs9469445	1.00[EUR][1000 genomes]
rs9469446	1.00[EUR][1000 genomes]
rs9469468	1.00[EUR][1000 genomes]
rs9469473	1.00[EUR][1000 genomes]
rs9469474	1.00[EUR][1000 genomes]
rs9469476	1.00[EUR][1000 genomes]
rs9469477	1.00[EUR][1000 genomes]
rs9469478	1.00[EUR][1000 genomes]
rs9469479	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33341000-33352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33341200-33358600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:33343800-33359200	Weak transcription	Right Atrium	heart
4	chr6:33344000-33351800	Weak transcription	Esophagus	oesophagus
5	chr6:33345600-33358800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:33348400-33358800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:33348600-33352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:33350000-33351200	Enhancers	Placenta	Placenta
9	chr6:33350200-33351800	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:33350200-33352400	Weak transcription	K562	blood
11	chr6:33350200-33352600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:33350600-33351600	Weak transcription	Colon Smooth Muscle	Colon

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