Variant report

Variant	rs11970477
Chromosome Location	chr6:33481571-33481572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33480361..33482958-chr6:33629089..33631311,2	K562	blood:
2	chr6:33479121..33484420-chr6:33487848..33490096,5	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10214667	1.00[EUR][1000 genomes]
rs11967163	1.00[EUR][1000 genomes]
rs28488940	1.00[EUR][1000 genomes]
rs28589816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28868935	1.00[EUR][1000 genomes]
rs41271255	1.00[EUR][1000 genomes]
rs557559	1.00[CEU][hapmap]
rs55897728	1.00[EUR][1000 genomes]
rs56085633	1.00[EUR][1000 genomes]
rs56122765	1.00[EUR][1000 genomes]
rs56124649	1.00[EUR][1000 genomes]
rs56148814	1.00[EUR][1000 genomes]
rs56226140	1.00[EUR][1000 genomes]
rs56250036	1.00[EUR][1000 genomes]
rs56875788	1.00[EUR][1000 genomes]
rs57104544	1.00[EUR][1000 genomes]
rs57290518	1.00[EUR][1000 genomes]
rs57877240	1.00[EUR][1000 genomes]
rs58043092	1.00[EUR][1000 genomes]
rs58058146	1.00[EUR][1000 genomes]
rs58312523	1.00[EUR][1000 genomes]
rs58566767	1.00[EUR][1000 genomes]
rs59401679	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60289279	1.00[EUR][1000 genomes]
rs60854312	1.00[EUR][1000 genomes]
rs60880341	1.00[EUR][1000 genomes]
rs61138871	1.00[EUR][1000 genomes]
rs61163286	1.00[EUR][1000 genomes]
rs61348385	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61589902	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73402380	1.00[EUR][1000 genomes]
rs73402381	1.00[EUR][1000 genomes]
rs73402386	1.00[EUR][1000 genomes]
rs73412035	1.00[EUR][1000 genomes]
rs73412040	1.00[EUR][1000 genomes]
rs73741826	1.00[EUR][1000 genomes]
rs73741830	1.00[EUR][1000 genomes]
rs73741832	1.00[EUR][1000 genomes]
rs73741833	1.00[EUR][1000 genomes]
rs73741836	1.00[EUR][1000 genomes]
rs73741932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73743206	1.00[EUR][1000 genomes]
rs73743207	1.00[EUR][1000 genomes]
rs7742848	1.00[EUR][1000 genomes]
rs7750423	1.00[AMR][1000 genomes]
rs9461859	1.00[EUR][1000 genomes]
rs9461861	1.00[EUR][1000 genomes]
rs9461865	1.00[EUR][1000 genomes]
rs9461866	1.00[EUR][1000 genomes]
rs9461871	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461872	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469408	1.00[EUR][1000 genomes]
rs9469409	1.00[EUR][1000 genomes]
rs9469410	1.00[EUR][1000 genomes]
rs9469415	1.00[EUR][1000 genomes]
rs9469416	1.00[EUR][1000 genomes]
rs9469419	1.00[EUR][1000 genomes]
rs9469421	1.00[EUR][1000 genomes]
rs9469433	1.00[EUR][1000 genomes]
rs9469437	1.00[EUR][1000 genomes]
rs9469441	1.00[EUR][1000 genomes]
rs9469442	1.00[EUR][1000 genomes]
rs9469444	1.00[EUR][1000 genomes]
rs9469445	1.00[EUR][1000 genomes]
rs9469446	1.00[EUR][1000 genomes]
rs9469465	1.00[CEU][hapmap]
rs9469468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469473	1.00[EUR][1000 genomes]
rs9469474	1.00[EUR][1000 genomes]
rs9469476	1.00[EUR][1000 genomes]
rs9469477	1.00[EUR][1000 genomes]
rs9469478	1.00[EUR][1000 genomes]
rs9469479	1.00[EUR][1000 genomes]
rs9469516	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3392894	chr6:33479074-33482772	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv528962	chr6:33480435-33485241	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33480600-33484800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33481000-33488000	Weak transcription	Spleen	Spleen
3	chr6:33481400-33491200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links