Variant report

Variant	rs73743207
Chromosome Location	chr6:33556593-33556594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33555689..33557372-chr6:33575674..33577429,2	MCF-7	breast:
2	chr6:33555453..33558278-chr6:33607870..33609566,2	K562	blood:
3	chr6:33556084..33559190-chr6:33561463..33564085,3	K562	blood:
4	chr6:33555432..33562879-chr6:33670455..33680174,12	K562	blood:
5	chr6:33554633..33558061-chr6:33675915..33678804,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137288	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10214667	1.00[EUR][1000 genomes]
rs11967163	1.00[EUR][1000 genomes]
rs11970477	1.00[EUR][1000 genomes]
rs28488940	1.00[EUR][1000 genomes]
rs28589816	1.00[EUR][1000 genomes]
rs41271255	1.00[EUR][1000 genomes]
rs55897728	1.00[EUR][1000 genomes]
rs56085633	1.00[EUR][1000 genomes]
rs56122765	1.00[EUR][1000 genomes]
rs56124649	1.00[EUR][1000 genomes]
rs56148814	1.00[EUR][1000 genomes]
rs56226140	1.00[EUR][1000 genomes]
rs56250036	1.00[EUR][1000 genomes]
rs56740052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56875788	1.00[EUR][1000 genomes]
rs57104544	1.00[EUR][1000 genomes]
rs57290518	1.00[EUR][1000 genomes]
rs57877240	1.00[EUR][1000 genomes]
rs58043092	1.00[EUR][1000 genomes]
rs58058146	1.00[EUR][1000 genomes]
rs58312523	1.00[EUR][1000 genomes]
rs58566767	1.00[EUR][1000 genomes]
rs59401679	1.00[EUR][1000 genomes]
rs60263379	1.00[EUR][1000 genomes]
rs60289279	1.00[EUR][1000 genomes]
rs60854312	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60880341	1.00[EUR][1000 genomes]
rs61138871	1.00[EUR][1000 genomes]
rs61163286	1.00[EUR][1000 genomes]
rs61348385	1.00[EUR][1000 genomes]
rs61589902	1.00[EUR][1000 genomes]
rs73402380	1.00[EUR][1000 genomes]
rs73402381	1.00[EUR][1000 genomes]
rs73402386	1.00[EUR][1000 genomes]
rs73741830	1.00[EUR][1000 genomes]
rs73741832	1.00[EUR][1000 genomes]
rs73741833	1.00[EUR][1000 genomes]
rs73741836	1.00[EUR][1000 genomes]
rs73741932	1.00[EUR][1000 genomes]
rs73743206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742848	1.00[EUR][1000 genomes]
rs7754339	1.00[EUR][1000 genomes]
rs9282611	1.00[AMR][1000 genomes]
rs9461859	1.00[EUR][1000 genomes]
rs9461861	1.00[EUR][1000 genomes]
rs9461865	1.00[EUR][1000 genomes]
rs9461866	1.00[EUR][1000 genomes]
rs9461871	1.00[EUR][1000 genomes]
rs9461872	1.00[EUR][1000 genomes]
rs9469415	1.00[EUR][1000 genomes]
rs9469416	1.00[EUR][1000 genomes]
rs9469419	1.00[EUR][1000 genomes]
rs9469421	1.00[EUR][1000 genomes]
rs9469433	1.00[EUR][1000 genomes]
rs9469437	1.00[EUR][1000 genomes]
rs9469441	1.00[EUR][1000 genomes]
rs9469442	1.00[EUR][1000 genomes]
rs9469444	1.00[EUR][1000 genomes]
rs9469445	1.00[EUR][1000 genomes]
rs9469446	1.00[EUR][1000 genomes]
rs9469468	1.00[EUR][1000 genomes]
rs9469473	1.00[EUR][1000 genomes]
rs9469474	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9469476	1.00[EUR][1000 genomes]
rs9469477	1.00[EUR][1000 genomes]
rs9469478	1.00[EUR][1000 genomes]
rs9469479	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33548400-33557000	Weak transcription	HSMM	muscle
2	chr6:33548400-33557200	Weak transcription	NHDF-Ad	bronchial
3	chr6:33548400-33557600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33548400-33557800	Weak transcription	Right Atrium	heart
5	chr6:33548600-33560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:33548800-33557800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:33551800-33557200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:33552000-33557000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:33553600-33557000	Weak transcription	Ovary	ovary
10	chr6:33553600-33558000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:33553800-33556600	Weak transcription	Fetal Intestine Large	intestine
12	chr6:33553800-33556600	Weak transcription	Lung	lung
13	chr6:33553800-33556600	Weak transcription	Pancreas	Pancrea
14	chr6:33553800-33556800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:33553800-33556800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:33553800-33556800	Weak transcription	Stomach Mucosa	stomach
17	chr6:33553800-33557000	Weak transcription	Fetal Stomach	stomach
18	chr6:33553800-33557000	Weak transcription	HMEC	breast
19	chr6:33553800-33557000	Weak transcription	HSMMtube	muscle
20	chr6:33553800-33557200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:33553800-33557200	Weak transcription	Fetal Heart	heart
22	chr6:33553800-33557400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:33553800-33557400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:33553800-33557600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:33553800-33557600	Weak transcription	Left Ventricle	heart
26	chr6:33553800-33557600	Weak transcription	NH-A	brain
27	chr6:33553800-33557600	Weak transcription	Osteobl	bone
28	chr6:33553800-33557800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:33553800-33557800	Weak transcription	Esophagus	oesophagus
30	chr6:33553800-33558400	Weak transcription	Gastric	stomach
31	chr6:33553800-33560400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:33554000-33556600	Weak transcription	Colonic Mucosa	Colon
33	chr6:33554000-33556600	Weak transcription	Hela-S3	cervix
34	chr6:33554000-33556600	Weak transcription	HUVEC	blood vessel
35	chr6:33554000-33557000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:33554000-33557000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:33554000-33557000	Weak transcription	Adipose Nuclei	Adipose
38	chr6:33554000-33557000	Weak transcription	Fetal Lung	lung
39	chr6:33554000-33557200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:33554000-33557200	Weak transcription	Placenta	Placenta
41	chr6:33554000-33557200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:33554000-33557400	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:33554000-33557600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:33554000-33557600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:33554000-33557600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:33554000-33557600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:33554000-33557600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:33554000-33557800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:33554000-33557800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:33554000-33557800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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