Variant report

Variant	rs73741836
Chromosome Location	chr6:33389650-33389651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33279489..33293095-chr6:33375317..33398824,56	K562	blood:
2	chr6:33242929..33245218-chr6:33388533..33390277,2	K562	blood:
3	chr6:33358171..33361215-chr6:33389565..33394982,4	MCF-7	breast:
4	chr6:33237639..33241732-chr6:33383253..33390116,11	K562	blood:
5	chr6:33372672..33375320-chr6:33388854..33391700,2	MCF-7	breast:
6	chr6:33279097..33283546-chr6:33386045..33390564,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204209	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000235863	Chromatin interaction
ENSG00000236104	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000223501	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10214667	1.00[EUR][1000 genomes]
rs11967163	1.00[EUR][1000 genomes]
rs11970477	1.00[EUR][1000 genomes]
rs28488940	1.00[EUR][1000 genomes]
rs28589816	1.00[EUR][1000 genomes]
rs28868935	1.00[EUR][1000 genomes]
rs55897728	1.00[EUR][1000 genomes]
rs56085633	1.00[EUR][1000 genomes]
rs56122765	1.00[EUR][1000 genomes]
rs56124649	1.00[EUR][1000 genomes]
rs56148814	1.00[EUR][1000 genomes]
rs56226140	1.00[EUR][1000 genomes]
rs56250036	1.00[EUR][1000 genomes]
rs56875788	1.00[EUR][1000 genomes]
rs57104544	1.00[EUR][1000 genomes]
rs57290518	1.00[EUR][1000 genomes]
rs57877240	1.00[EUR][1000 genomes]
rs58043092	1.00[EUR][1000 genomes]
rs58058146	1.00[EUR][1000 genomes]
rs58312523	1.00[EUR][1000 genomes]
rs58566767	1.00[EUR][1000 genomes]
rs59401679	1.00[EUR][1000 genomes]
rs60289279	1.00[EUR][1000 genomes]
rs60854312	1.00[EUR][1000 genomes]
rs60880341	1.00[EUR][1000 genomes]
rs61138871	1.00[EUR][1000 genomes]
rs61163286	1.00[EUR][1000 genomes]
rs61348385	1.00[EUR][1000 genomes]
rs61589902	1.00[EUR][1000 genomes]
rs73402380	1.00[EUR][1000 genomes]
rs73402381	1.00[EUR][1000 genomes]
rs73402386	1.00[EUR][1000 genomes]
rs73412035	1.00[EUR][1000 genomes]
rs73412040	1.00[EUR][1000 genomes]
rs73741826	1.00[EUR][1000 genomes]
rs73741830	1.00[EUR][1000 genomes]
rs73741832	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73741833	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73741932	1.00[EUR][1000 genomes]
rs73743206	1.00[EUR][1000 genomes]
rs73743207	1.00[EUR][1000 genomes]
rs7742848	1.00[EUR][1000 genomes]
rs9461859	1.00[EUR][1000 genomes]
rs9461861	1.00[EUR][1000 genomes]
rs9461865	1.00[EUR][1000 genomes]
rs9461866	1.00[EUR][1000 genomes]
rs9461871	1.00[EUR][1000 genomes]
rs9461872	1.00[EUR][1000 genomes]
rs9469408	1.00[EUR][1000 genomes]
rs9469409	1.00[EUR][1000 genomes]
rs9469410	1.00[EUR][1000 genomes]
rs9469415	1.00[EUR][1000 genomes]
rs9469416	1.00[EUR][1000 genomes]
rs9469419	1.00[EUR][1000 genomes]
rs9469421	1.00[EUR][1000 genomes]
rs9469433	1.00[EUR][1000 genomes]
rs9469437	1.00[EUR][1000 genomes]
rs9469441	1.00[EUR][1000 genomes]
rs9469442	1.00[EUR][1000 genomes]
rs9469444	1.00[EUR][1000 genomes]
rs9469445	1.00[EUR][1000 genomes]
rs9469446	1.00[EUR][1000 genomes]
rs9469468	1.00[EUR][1000 genomes]
rs9469473	1.00[EUR][1000 genomes]
rs9469474	1.00[EUR][1000 genomes]
rs9469476	1.00[EUR][1000 genomes]
rs9469477	1.00[EUR][1000 genomes]
rs9469478	1.00[EUR][1000 genomes]
rs9469479	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv885769	chr6:33377522-33412197	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv932196	chr6:33383131-33400706	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
6	esv3491403	chr6:33386574-33390272	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
7	esv3491404	chr6:33386574-33390272	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	esv3404776	chr6:33387074-33389997	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33386000-33392600	Weak transcription	Gastric	stomach
2	chr6:33386800-33389800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:33386800-33392600	Weak transcription	Left Ventricle	heart
4	chr6:33387000-33392200	Weak transcription	Hela-S3	cervix
5	chr6:33387400-33392200	Weak transcription	Placenta	Placenta
6	chr6:33387400-33392200	Weak transcription	Spleen	Spleen
7	chr6:33387600-33392400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:33387800-33391800	Weak transcription	Lung	lung
9	chr6:33387800-33392000	Weak transcription	Small Intestine	intestine
10	chr6:33387800-33392200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:33387800-33392200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:33387800-33392200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:33387800-33392200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:33387800-33392400	Weak transcription	Primary B cells from cord blood	blood
15	chr6:33387800-33392400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:33387800-33392400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:33387800-33392600	Weak transcription	A549	lung
18	chr6:33388000-33392400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:33388000-33392400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:33388000-33392400	Weak transcription	Adipose Nuclei	Adipose
21	chr6:33388000-33392400	Weak transcription	Brain Substantia Nigra	brain
22	chr6:33388000-33392400	Weak transcription	HMEC	breast
23	chr6:33388000-33392600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:33388000-33392600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:33388000-33392600	Weak transcription	HSMM	muscle
26	chr6:33388200-33392200	Weak transcription	Psoas Muscle	Psoas
27	chr6:33388400-33392000	Weak transcription	Colonic Mucosa	Colon
28	chr6:33388400-33392200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:33388400-33392200	Weak transcription	Aorta	Aorta
30	chr6:33388400-33392200	Weak transcription	Right Ventricle	heart
31	chr6:33388400-33392600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:33388400-33392600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:33388600-33389800	Enhancers	Primary T cells from cord blood	blood
34	chr6:33388600-33389800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:33388600-33389800	Enhancers	Thymus	Thymus
36	chr6:33388600-33390200	Enhancers	Fetal Thymus	thymus
37	chr6:33388600-33391000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:33388600-33391200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:33388600-33391200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:33388600-33391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:33388600-33391400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:33388600-33391800	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:33388600-33391800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:33388600-33391800	Weak transcription	Right Atrium	heart
45	chr6:33388600-33392000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:33388600-33392200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr6:33388600-33392200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:33388600-33392400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:33388600-33392400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:33388600-33392400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links