Variant report

Variant	rs73430946
Chromosome Location	chr11:15925511-15925512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15925472..15928015-chr11:15930069..15932829,3	K562	blood:
2	chr11:15924300..15926457-chr11:15932975..15935932,2	K562	blood:
3	chr11:15925472..15927026-chr11:15930642..15932829,2	K562	blood:
4	chr11:15908333..15910063-chr11:15925369..15928006,2	K562	blood:
5	chr11:15924899..15926529-chr11:16635118..16637949,2	K562	blood:

Variant related genes	Relation type
ENSG00000254661	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11023785	0.83[AMR][1000 genomes]
rs12276809	0.83[AMR][1000 genomes]
rs28630606	0.83[AMR][1000 genomes]
rs6486269	0.83[AMR][1000 genomes]
rs6486271	0.83[AMR][1000 genomes]
rs7114674	0.83[AMR][1000 genomes]
rs7930998	0.83[AMR][1000 genomes]
rs7946823	0.83[AMR][1000 genomes]
rs7952378	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15915000-15929200	Weak transcription	Esophagus	oesophagus
2	chr11:15915800-15928400	Weak transcription	Fetal Kidney	kidney
3	chr11:15918400-15928000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:15919800-15934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:15920800-15926400	Weak transcription	Psoas Muscle	Psoas
6	chr11:15923400-15927200	Weak transcription	Spleen	Spleen
7	chr11:15923400-15927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:15923400-15928200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:15923600-15931600	Weak transcription	Fetal Heart	heart
10	chr11:15923600-15933200	Weak transcription	Right Atrium	heart
11	chr11:15923800-15927800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:15923800-15928000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:15923800-15933200	Weak transcription	Right Ventricle	heart
14	chr11:15924000-15932000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:15924200-15926600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:15924400-15928400	Weak transcription	Pancreas	Pancrea
17	chr11:15924800-15925600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:15924800-15927000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:15925000-15928000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:15925200-15926800	Weak transcription	Gastric	stomach
21	chr11:15925200-15928400	Weak transcription	Lung	lung
22	chr11:15925200-15928600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:15925400-15927800	Enhancers	Skeletal Muscle Male	skeletal muscle

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