Variant report

Variant	rs28630606
Chromosome Location	chr11:15919117-15919118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15919105..15920647-chr11:15923834..15925463,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11023761	0.80[AFR][1000 genomes]
rs11023782	0.83[AMR][1000 genomes]
rs11023785	1.00[AMR][1000 genomes]
rs11023786	0.83[AMR][1000 genomes]
rs12274954	0.83[AMR][1000 genomes]
rs12275607	0.83[AMR][1000 genomes]
rs12276809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932331	0.83[AMR][1000 genomes]
rs6486269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486271	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114674	1.00[AMR][1000 genomes]
rs7130109	0.83[AMR][1000 genomes]
rs73430946	0.83[AMR][1000 genomes]
rs7930998	1.00[AMR][1000 genomes]
rs7946823	1.00[AMR][1000 genomes]
rs7952378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15914800-15922200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:15915000-15923200	Weak transcription	Pancreas	Pancrea
4	chr11:15915000-15929200	Weak transcription	Esophagus	oesophagus
5	chr11:15915200-15922800	Weak transcription	Left Ventricle	heart
6	chr11:15915200-15923000	Weak transcription	Gastric	stomach
7	chr11:15915200-15923000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:15915200-15924800	Weak transcription	NHEK	skin
9	chr11:15915400-15923000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:15915400-15923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:15915800-15919200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:15915800-15928400	Weak transcription	Fetal Kidney	kidney
13	chr11:15916000-15919400	Weak transcription	HSMMtube	muscle
14	chr11:15916000-15922400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:15916000-15922600	Weak transcription	Fetal Heart	heart
16	chr11:15916000-15922600	Weak transcription	Ovary	ovary
17	chr11:15916200-15919400	Weak transcription	Spleen	Spleen
18	chr11:15916200-15922400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:15916600-15919200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:15916800-15921200	Enhancers	Fetal Muscle Leg	muscle
21	chr11:15917200-15920800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr11:15917200-15920800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:15917600-15919800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:15917600-15920800	Enhancers	Psoas Muscle	Psoas
25	chr11:15917800-15923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:15918200-15919800	Enhancers	HSMM	muscle
27	chr11:15918400-15919200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:15918400-15920000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:15918400-15923000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:15918400-15928000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:15918800-15919200	Bivalent Enhancer	Fetal Stomach	stomach
32	chr11:15918800-15919600	Enhancers	NH-A	brain
33	chr11:15918800-15919800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr11:15918800-15919800	Enhancers	Hela-S3	cervix
35	chr11:15918800-15920200	Enhancers	Osteobl	bone
36	chr11:15919000-15919200	Bivalent Enhancer	Adipose Nuclei	Adipose
37	chr11:15919000-15919400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr11:15919000-15919600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:15919000-15919600	Enhancers	Primary B cells from cord blood	blood
40	chr11:15919000-15919600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:15919000-15919600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:15919000-15919600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:15919000-15919600	Enhancers	Colonic Mucosa	Colon
44	chr11:15919000-15919600	Enhancers	Placenta	Placenta
45	chr11:15919000-15919600	Enhancers	HMEC	breast
46	chr11:15919000-15919600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr11:15919000-15920000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:15919000-15920000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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